Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 AC166836.1-201ENSMUST00000219933 1795 ntBASIC12.2□□□□□ -0.46
Lig3P97386 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Trim61-201ENSMUST00000078409 1977 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Gm19327-201ENSMUST00000220651 3271 ntBASIC12.2□□□□□ -0.46
Lig3P97386 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Gm15003-201ENSMUST00000118884 446 ntBASIC12.2□□□□□ -0.46
Lig3P97386 Gm10169-201ENSMUST00000121822 348 ntBASIC12.2□□□□□ -0.46
Lig3P97386 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Ighv1-2-201ENSMUST00000195325 378 ntBASIC12.2□□□□□ -0.46
Lig3P97386 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Gm8342-201ENSMUST00000209839 757 ntBASIC12.2□□□□□ -0.46
Lig3P97386 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Gm18514-201ENSMUST00000218980 436 ntBASIC12.2□□□□□ -0.46
Lig3P97386 AC153929.1-201ENSMUST00000219009 303 ntBASIC12.2□□□□□ -0.46
Lig3P97386 Gm18499-201ENSMUST00000220808 1021 ntBASIC12.2□□□□□ -0.46
Lig3P97386 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Lig3P97386 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
Lig3P97386 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Nfx1-201ENSMUST00000030133 4349 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC12.2□□□□□ -0.46
Lig3P97386 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Rpgrip1-202ENSMUST00000111603 5380 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Slc25a44-202ENSMUST00000168755 3418 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Slc18a1-201ENSMUST00000037478 3115 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lig3P97386 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Lig3P97386 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Lig3P97386 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Htr1b-202ENSMUST00000183482 4724 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
Lig3P97386 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Lig3P97386 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Zbtb21-203ENSMUST00000113734 6010 ntAPPRIS P4 TSL 2 BASIC12.19□□□□□ -0.46
Lig3P97386 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC12.19□□□□□ -0.46
Lig3P97386 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC12.19□□□□□ -0.46
Lig3P97386 Lamb1-205ENSMUST00000169088 5557 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Lig3P97386 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Poldip3-202ENSMUST00000100375 3157 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Prkd2-201ENSMUST00000086104 3628 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Gm13117-201ENSMUST00000120894 691 ntBASIC12.19□□□□□ -0.46
Lig3P97386 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC12.19□□□□□ -0.46
Lig3P97386 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC12.19□□□□□ -0.46
Lig3P97386 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC12.19□□□□□ -0.46
Lig3P97386 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC12.19□□□□□ -0.46
Lig3P97386 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Lig3P97386 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC12.19□□□□□ -0.46
Lig3P97386 Gm5451-201ENSMUST00000080545 579 ntBASIC12.19□□□□□ -0.46
Lig3P97386 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC12.19□□□□□ -0.46
Lig3P97386 Adra2b-202ENSMUST00000104934 4014 ntAPPRIS ALT2 BASIC12.19□□□□□ -0.46
Lig3P97386 Slc38a3-203ENSMUST00000177567 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Slc38a3-209ENSMUST00000193932 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Ddx52-201ENSMUST00000049257 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Dcun1d2-203ENSMUST00000110839 2937 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Timd4-201ENSMUST00000068877 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Gm43868-201ENSMUST00000205187 2114 ntBASIC12.19□□□□□ -0.46
Lig3P97386 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Lig3P97386 Arvcf-203ENSMUST00000115612 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Tcp10a-202ENSMUST00000128533 2589 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Gnas-223ENSMUST00000185956 3729 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Gnas-224ENSMUST00000186907 3729 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lig3P97386 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
Lig3P97386 Gpatch2-204ENSMUST00000110943 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lig3P97386 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Lig3P97386 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Lig3P97386 Slc13a5-205ENSMUST00000208056 3111 ntTSL 5 BASIC12.18□□□□□ -0.46
Lig3P97386 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 77.5 ms