Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 AC133602.1-201ENSMUST00000227510 509 ntBASIC13.22□□□□□ -0.29
Rfx1P48377 AW549877-201ENSMUST00000046633 5076 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Rfx1P48377 Zbtb21-203ENSMUST00000113734 6010 ntAPPRIS P4 TSL 2 BASIC13.22□□□□□ -0.29
Rfx1P48377 Hmg20a-206ENSMUST00000217518 2468 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Rfx1P48377 Mylk3-202ENSMUST00000121972 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Rfx1P48377 Rcbtb2-219ENSMUST00000169513 3622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Rfx1P48377 Lyn-201ENSMUST00000041377 3463 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Rfx1P48377 Gm6124-201ENSMUST00000188240 2580 ntBASIC13.22□□□□□ -0.29
Rfx1P48377 6430548M08Rik-203ENSMUST00000108950 3125 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Rfx1P48377 Gm18222-201ENSMUST00000202416 1387 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Gramd1b-212ENSMUST00000165104 3824 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
Rfx1P48377 Fbln2-202ENSMUST00000113498 4644 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Rfx1P48377 Gm9244-201ENSMUST00000056767 2129 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Snx31-203ENSMUST00000161202 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Rfx1P48377 Mei4-203ENSMUST00000189832 2578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Rfx1P48377 Abcf3-201ENSMUST00000003319 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Rfx1P48377 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Rfx1P48377 Gm13916-201ENSMUST00000117368 628 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Rfx1P48377 Gm25881-201ENSMUST00000157783 103 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Rfx1P48377 Gm25890-201ENSMUST00000177643 165 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Rnu1b2-201ENSMUST00000178073 165 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Rnu1b1-201ENSMUST00000178250 165 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Gm22614-201ENSMUST00000178300 165 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Rfx1P48377 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC13.21□□□□□ -0.29
Rfx1P48377 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC13.21□□□□□ -0.29
Rfx1P48377 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC13.21□□□□□ -0.29
Rfx1P48377 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Rfx1P48377 Ighv1-62-201ENSMUST00000193406 350 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Gm37259-201ENSMUST00000193903 849 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Gm42867-201ENSMUST00000202995 469 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Gm17825-201ENSMUST00000206836 794 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 AC153962.4-201ENSMUST00000217878 242 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Rfx1P48377 Gm22042-201ENSMUST00000082989 165 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Gm26110-201ENSMUST00000083971 165 ntBASIC13.21□□□□□ -0.29
Rfx1P48377 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Rfx1P48377 Scn5a-203ENSMUST00000120420 7536 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
Rfx1P48377 Tro-201ENSMUST00000087253 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Rfx1P48377 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Rfx1P48377 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Rfx1P48377 Pou2f1-204ENSMUST00000111426 2671 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
Rfx1P48377 Orc4-201ENSMUST00000028098 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Rfx1P48377 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Rfx1P48377 Tbc1d31-201ENSMUST00000022992 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Rfx1P48377 Tor4a-201ENSMUST00000081869 3255 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Rfx1P48377 Plxna3-201ENSMUST00000004326 6943 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC13.2□□□□□ -0.3
Rfx1P48377 C130021I20Rik-201ENSMUST00000147294 3693 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Znrf1-202ENSMUST00000166859 3650 ntTSL 5 BASIC13.2□□□□□ -0.3
Rfx1P48377 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Cacna2d1-204ENSMUST00000115281 3412 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Pard3-213ENSMUST00000160766 4949 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Rfx1P48377 Phf8-202ENSMUST00000046962 3105 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Atp13a4-201ENSMUST00000039090 2878 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC13.2□□□□□ -0.3
Rfx1P48377 Vwa7-202ENSMUST00000172499 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
Rfx1P48377 Fam234a-202ENSMUST00000118487 2629 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Tmem184a-202ENSMUST00000110832 4326 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 1700030K09Rik-202ENSMUST00000121902 2373 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Rfx1P48377 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Gm15374-201ENSMUST00000119313 844 ntBASIC13.2□□□□□ -0.3
Rfx1P48377 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC13.2□□□□□ -0.3
Rfx1P48377 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC13.2□□□□□ -0.3
Rfx1P48377 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC13.2□□□□□ -0.3
Rfx1P48377 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
Rfx1P48377 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC13.2□□□□□ -0.3
Rfx1P48377 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC13.2□□□□□ -0.3
Rfx1P48377 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Gm9678-201ENSMUST00000198979 1149 ntBASIC13.2□□□□□ -0.3
Rfx1P48377 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 AC102569.1-204ENSMUST00000222816 793 ntTSL 3 BASIC13.2□□□□□ -0.3
Rfx1P48377 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC13.2□□□□□ -0.3
Rfx1P48377 Camk2b-210ENSMUST00000109815 3780 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
Rfx1P48377 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
Rfx1P48377 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Lamb1-205ENSMUST00000169088 5557 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Rfx1P48377 Psd2-203ENSMUST00000175734 4300 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC13.2□□□□□ -0.3
Rfx1P48377 Ppef2-202ENSMUST00000201130 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Tldc1-201ENSMUST00000049156 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 Gm18642-201ENSMUST00000206642 1400 ntBASIC13.2□□□□□ -0.3
Rfx1P48377 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
Rfx1P48377 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Rfx1P48377 AC108416.1-201ENSMUST00000228755 1558 ntBASIC13.2□□□□□ -0.3
Rfx1P48377 Atxn7l3-203ENSMUST00000107134 3712 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
Rfx1P48377 Traip-201ENSMUST00000049348 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Cryz-201ENSMUST00000029850 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 D630029K05Rik-201ENSMUST00000033651 2133 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Tcn2-206ENSMUST00000109992 1945 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Rfx1P48377 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Itgad-204ENSMUST00000177111 3845 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Rfx1P48377 AC124433.1-202ENSMUST00000224762 1535 ntBASIC13.19□□□□□ -0.3
Rfx1P48377 Rpap1-201ENSMUST00000048493 4744 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Rfx1P48377 Gm37785-201ENSMUST00000195783 2408 ntBASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms