Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm7653-201ENSMUST00000214567 508 ntBASIC9.13□□□□□ -0.95
Hmgb3O54879 Gm8712-201ENSMUST00000221090 701 ntBASIC9.13□□□□□ -0.95
Hmgb3O54879 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC9.13□□□□□ -0.95
Hmgb3O54879 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC9.13□□□□□ -0.95
Hmgb3O54879 Sv2b-201ENSMUST00000085164 5307 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Pdgfra-201ENSMUST00000000476 6549 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Rorb-203ENSMUST00000112832 9293 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Nkap-201ENSMUST00000016553 4230 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Zc3h18-202ENSMUST00000093073 3705 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Ryr2-202ENSMUST00000170156 16813 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
Hmgb3O54879 Ryr2-201ENSMUST00000021750 16814 ntAPPRIS P2 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Cfap44-202ENSMUST00000120049 6199 ntAPPRIS P1 TSL 5 BASIC9.13□□□□□ -0.95
Hmgb3O54879 E2f8-201ENSMUST00000058745 3691 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Ank2-214ENSMUST00000182547 2428 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Parp1-201ENSMUST00000027777 3873 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 D630003M21Rik-202ENSMUST00000103121 4521 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 5830411N06Rik-203ENSMUST00000164583 3342 ntAPPRIS P4 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Gm5846-201ENSMUST00000193146 1414 ntBASIC9.13□□□□□ -0.95
Hmgb3O54879 Gm1840-201ENSMUST00000051687 1432 ntBASIC9.13□□□□□ -0.95
Hmgb3O54879 Tomm20-201ENSMUST00000179857 4902 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Sh3d21-201ENSMUST00000094760 1859 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Slc7a14-201ENSMUST00000091259 8897 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Txlng-204ENSMUST00000112316 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
Hmgb3O54879 Gm43517-201ENSMUST00000110746 3904 ntAPPRIS P1 TSL 2 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Hmgcll1-205ENSMUST00000183425 3239 ntTSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 AC109214.1-201ENSMUST00000219520 1372 ntBASIC9.12□□□□□ -0.95
Hmgb3O54879 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Rab2b-201ENSMUST00000022765 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Cnga4-201ENSMUST00000033187 2484 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Fam83a-202ENSMUST00000160942 2876 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Phc1-204ENSMUST00000159252 3744 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Aqr-202ENSMUST00000102543 4352 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Qtrt2-201ENSMUST00000023387 2838 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Naca-202ENSMUST00000092048 6745 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Tro-201ENSMUST00000087253 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Ctcfl-201ENSMUST00000094287 3217 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Myo7a-202ENSMUST00000107122 6867 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Brca2-210ENSMUST00000202313 10517 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Gm44617-202ENSMUST00000209122 2763 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Gm22018-201ENSMUST00000104357 131 ntBASIC9.12□□□□□ -0.95
Hmgb3O54879 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Gm11511-201ENSMUST00000118146 540 ntBASIC9.12□□□□□ -0.95
Hmgb3O54879 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Gm34767-201ENSMUST00000191813 1062 ntBASIC9.12□□□□□ -0.95
Hmgb3O54879 Gm5982-201ENSMUST00000196234 512 ntBASIC9.12□□□□□ -0.95
Hmgb3O54879 Dcun1d2-206ENSMUST00000203604 2112 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC9.12□□□□□ -0.95
Hmgb3O54879 AC140406.1-201ENSMUST00000226481 465 ntBASIC9.12□□□□□ -0.95
Hmgb3O54879 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Gm5455-201ENSMUST00000058710 715 ntBASIC9.12□□□□□ -0.95
Hmgb3O54879 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Itgax-201ENSMUST00000033053 4046 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Uaca-202ENSMUST00000214354 4417 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Cryz-201ENSMUST00000029850 2507 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Usp17le-202ENSMUST00000211384 1885 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Mgat4a-205ENSMUST00000151952 7251 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Slc37a4-201ENSMUST00000165839 2086 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Osbpl7-206ENSMUST00000168565 3535 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Nrf1-208ENSMUST00000115208 2492 ntTSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 AC171277.1-201ENSMUST00000216902 1441 ntBASIC9.12□□□□□ -0.95
Hmgb3O54879 Khdrbs2-204ENSMUST00000188257 5278 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Hyal3-201ENSMUST00000040059 1830 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Maob-201ENSMUST00000040820 2411 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Csf2rb2-201ENSMUST00000096356 4612 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Rlim-202ENSMUST00000121153 7439 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC9.12□□□□□ -0.95
Hmgb3O54879 Tubb2b-201ENSMUST00000075774 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Hmgb3O54879 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Mapre2-203ENSMUST00000118826 3052 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Vps33a-201ENSMUST00000031388 4235 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 CT025645.2-201ENSMUST00000223278 3827 ntBASIC9.11□□□□□ -0.95
Hmgb3O54879 Ssh2-201ENSMUST00000037912 9178 ntAPPRIS P3 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Unc45a-202ENSMUST00000107368 3635 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Hmgb3O54879 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC9.11□□□□□ -0.95
Hmgb3O54879 CT009713.5-203ENSMUST00000224218 2079 ntBASIC9.11□□□□□ -0.95
Hmgb3O54879 Pde2a-204ENSMUST00000209537 4100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Dnajc14-202ENSMUST00000217745 4133 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Hmgb3O54879 Hmgb2-201ENSMUST00000067925 2628 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms