Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Pcdhgb8-201ENSMUST00000195764 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 4930517G19Rik-201ENSMUST00000206152 1676 ntBASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 AC158636.1-201ENSMUST00000220118 1393 ntBASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Upf3bQ3ULL6 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Upf3bQ3ULL6 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Upf3bQ3ULL6 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Upf3bQ3ULL6 Gm18262-201ENSMUST00000222560 1946 ntBASIC11.9□□□□□ -0.51
Upf3bQ3ULL6 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC11.9□□□□□ -0.51
Upf3bQ3ULL6 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC11.9□□□□□ -0.51
Upf3bQ3ULL6 Poldip3-202ENSMUST00000100375 3157 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Zfp609-201ENSMUST00000159109 7777 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Zfp68-203ENSMUST00000110905 4749 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Zfp286-202ENSMUST00000108705 1979 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Tcof1-204ENSMUST00000176630 4529 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Gm24398-201ENSMUST00000157870 109 ntBASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Gm19015-201ENSMUST00000184002 1189 ntBASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 C630004L07Rik-201ENSMUST00000193236 1275 ntBASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Gm42657-201ENSMUST00000201746 211 ntBASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Gm18561-201ENSMUST00000206027 804 ntBASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Gm8285-201ENSMUST00000208293 759 ntBASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 CT009718.3-201ENSMUST00000221116 367 ntBASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 CT009527.1-201ENSMUST00000224205 339 ntBASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Lgi3-203ENSMUST00000226548 1001 ntBASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Rnf144b-201ENSMUST00000068891 4640 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Capn5-201ENSMUST00000040971 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Upf3bQ3ULL6 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm13384-201ENSMUST00000117166 1344 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm31938-201ENSMUST00000218081 1818 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Spata7-201ENSMUST00000048402 2052 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 A930016O22Rik-202ENSMUST00000208685 2349 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Cpeb1-209ENSMUST00000178892 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm14892-201ENSMUST00000117636 267 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm11892-201ENSMUST00000117711 1202 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm11667-201ENSMUST00000119828 486 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm15197-201ENSMUST00000120526 478 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 n-R5s84-201ENSMUST00000122591 109 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm18159-201ENSMUST00000174516 1070 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm18539-201ENSMUST00000204745 1090 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Cox6b1-204ENSMUST00000208838 354 ntTSL 3 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm40639-201ENSMUST00000214642 625 ntTSL 5 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 AC122876.1-201ENSMUST00000217619 825 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 AC122035.1-201ENSMUST00000227576 1016 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm23680-201ENSMUST00000083162 164 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Zfat-205ENSMUST00000162173 3561 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Gm43482-201ENSMUST00000202797 1861 ntBASIC11.88□□□□□ -0.51
Upf3bQ3ULL6 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms