Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm21136-201ENSMUST00000186812 2575 ntBASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm6605-201ENSMUST00000031488 2574 ntBASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm43931-201ENSMUST00000204817 2870 ntBASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Polq-202ENSMUST00000071452 7290 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Cacna2d4-201ENSMUST00000037434 5803 ntAPPRIS P3 TSL 2 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 AC167565.1-201ENSMUST00000226980 1833 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Tfam-201ENSMUST00000092430 4167 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Sorcs1-208ENSMUST00000211687 7080 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Loxhd1-202ENSMUST00000096547 6595 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gm12419-201ENSMUST00000116649 636 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gm13326-201ENSMUST00000118730 1011 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gm15615-201ENSMUST00000118876 198 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gm11675-201ENSMUST00000121873 832 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Thbs2-201ENSMUST00000170872 5922 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Rn7s6-201ENSMUST00000175005 291 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gm43127-201ENSMUST00000195890 2789 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gm5740-201ENSMUST00000211003 1857 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 CT009546.1-201ENSMUST00000222573 1120 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 CT025553.1-201ENSMUST00000226292 299 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Olfr584-201ENSMUST00000098210 964 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Tpp2-201ENSMUST00000087933 4649 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Swap70-201ENSMUST00000033325 4027 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Gm37600-201ENSMUST00000193764 3292 ntBASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Ptbp3-201ENSMUST00000030076 6855 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Smg6-201ENSMUST00000045281 5848 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Aqr-202ENSMUST00000102543 4352 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdc40Q9DC48 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Arid2-201ENSMUST00000096250 8507 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Llgl1-202ENSMUST00000108719 4268 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Notch2-201ENSMUST00000079812 10500 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Gm45416-201ENSMUST00000209713 2201 ntBASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Gm23272-201ENSMUST00000104053 129 ntBASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Gm14942-201ENSMUST00000119642 336 ntBASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Gm11244-201ENSMUST00000121243 237 ntBASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Gm12628-201ENSMUST00000122193 382 ntBASIC10.36□□□□□ -0.75
Cdc40Q9DC48 Mir1901-201ENSMUST00000122616 78 ntBASIC10.36□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 78.3 ms