Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lig3P97386 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lig3P97386 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lig3P97386 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC12.25□□□□□ -0.45
Lig3P97386 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lig3P97386 Gm44056-201ENSMUST00000204623 1427 ntBASIC12.25□□□□□ -0.45
Lig3P97386 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Lig3P97386 Crot-201ENSMUST00000003720 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lig3P97386 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lig3P97386 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lig3P97386 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lig3P97386 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lig3P97386 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC12.25□□□□□ -0.45
Lig3P97386 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC12.25□□□□□ -0.45
Lig3P97386 AC164099.2-201ENSMUST00000227795 2005 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Lig3P97386 Gm10684-201ENSMUST00000098827 2203 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lig3P97386 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lig3P97386 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Lig3P97386 AC154171.2-201ENSMUST00000225219 2652 ntBASIC12.24□□□□□ -0.45
Lig3P97386 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Ppp1r16b-203ENSMUST00000103116 6370 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Lig3P97386 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Lig3P97386 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC12.24□□□□□ -0.45
Lig3P97386 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 n-R5s84-201ENSMUST00000122591 109 ntBASIC12.24□□□□□ -0.45
Lig3P97386 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC12.24□□□□□ -0.45
Lig3P97386 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC12.24□□□□□ -0.45
Lig3P97386 Nudt12-203ENSMUST00000174122 1244 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Gm9136-201ENSMUST00000193368 454 ntBASIC12.24□□□□□ -0.45
Lig3P97386 Gm10152-201ENSMUST00000193475 1344 ntBASIC12.24□□□□□ -0.45
Lig3P97386 Gm43334-201ENSMUST00000197740 1318 ntBASIC12.24□□□□□ -0.45
Lig3P97386 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Lig3P97386 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC12.24□□□□□ -0.45
Lig3P97386 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC12.24□□□□□ -0.45
Lig3P97386 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.24□□□□□ -0.45
Lig3P97386 AC153962.2-201ENSMUST00000219417 550 ntBASIC12.24□□□□□ -0.45
Lig3P97386 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC12.24□□□□□ -0.45
Lig3P97386 Gm5434-202ENSMUST00000222384 1451 ntBASIC12.24□□□□□ -0.45
Lig3P97386 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Txlna-201ENSMUST00000046425 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Lig3P97386 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC12.24□□□□□ -0.45
Lig3P97386 Gm5434-201ENSMUST00000071825 1451 ntBASIC12.24□□□□□ -0.45
Lig3P97386 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Myh8-201ENSMUST00000019625 6149 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Scrn1-201ENSMUST00000019268 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Tnxb-201ENSMUST00000087399 12209 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Lig3P97386 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Lig3P97386 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lig3P97386 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC12.23□□□□□ -0.45
Lig3P97386 CT009489.1-201ENSMUST00000227740 1893 ntBASIC12.23□□□□□ -0.45
Lig3P97386 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC12.23□□□□□ -0.45
Lig3P97386 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Lig3P97386 Shc1-210ENSMUST00000191485 3154 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC12.23□□□□□ -0.45
Lig3P97386 Gm18782-201ENSMUST00000209023 1399 ntBASIC12.23□□□□□ -0.45
Lig3P97386 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Lig3P97386 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Lig3P97386 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Lig3P97386 Gm12856-201ENSMUST00000119471 1293 ntBASIC12.23□□□□□ -0.45
Lig3P97386 4930502E09Rik-201ENSMUST00000126016 755 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC12.23□□□□□ -0.45
Lig3P97386 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 Gm8723-201ENSMUST00000166076 820 ntBASIC12.23□□□□□ -0.45
Lig3P97386 Gm8701-201ENSMUST00000169259 874 ntBASIC12.23□□□□□ -0.45
Lig3P97386 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC12.23□□□□□ -0.45
Lig3P97386 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lig3P97386 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.23□□□□□ -0.45
Lig3P97386 Gm3726-201ENSMUST00000203110 785 ntBASIC12.23□□□□□ -0.45
Lig3P97386 Gm44711-201ENSMUST00000205414 1264 ntBASIC12.23□□□□□ -0.45
Lig3P97386 Gm45758-201ENSMUST00000212448 1006 ntBASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 66.8 ms