Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Rxra-206ENSMUST00000166775 3216 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Plekhg4-203ENSMUST00000160191 3339 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm23272-201ENSMUST00000104053 129 ntBASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm16071-201ENSMUST00000119589 793 ntBASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm17826-201ENSMUST00000189720 798 ntBASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm9463-201ENSMUST00000206707 601 ntBASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm45856-201ENSMUST00000212752 416 ntBASIC12.14□□□□□ -0.47
Chmp6P0C0A3 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 CT573047.1-201ENSMUST00000223652 851 ntBASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm10254-201ENSMUST00000052888 867 ntBASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Gm5451-201ENSMUST00000080545 579 ntBASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Slit2-202ENSMUST00000170109 7758 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Slit2-217ENSMUST00000174421 7785 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Tnk2-204ENSMUST00000115123 4225 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Thbs2-201ENSMUST00000170872 5922 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Rab3gap2-201ENSMUST00000069652 7052 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Chmp6P0C0A3 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Gm43127-201ENSMUST00000195890 2789 ntBASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 E130308A19Rik-202ENSMUST00000070150 10856 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Synpo2l-201ENSMUST00000057090 4394 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Dlgap1-214ENSMUST00000155016 4712 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Arpp21-223ENSMUST00000162097 3952 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Gm23694-201ENSMUST00000179335 110 ntBASIC12.13□□□□□ -0.47
Chmp6P0C0A3 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Gm37284-201ENSMUST00000193607 539 ntBASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Gm37826-201ENSMUST00000195329 322 ntBASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Gm5468-202ENSMUST00000227851 682 ntBASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Nudt13-207ENSMUST00000224311 1574 ntBASIC12.13□□□□□ -0.47
Chmp6P0C0A3 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Chmp6P0C0A3 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Chmp6P0C0A3 Zbtb21-201ENSMUST00000052089 5410 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chmp6P0C0A3 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Chmp6P0C0A3 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chmp6P0C0A3 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC12.12□□□□□ -0.47
Chmp6P0C0A3 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 90.7 ms