Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC16.9■□□□□ 0.3
Cux1P53564 Babam2-204ENSMUST00000114515 1497 ntTSL 5 BASIC16.9■□□□□ 0.3
Cux1P53564 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC16.9■□□□□ 0.3
Cux1P53564 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Cux1P53564 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC16.9■□□□□ 0.3
Cux1P53564 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Cux1P53564 Ighv1-5-201ENSMUST00000103494 294 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Cux1P53564 Gm8876-201ENSMUST00000120768 1122 ntBASIC16.9■□□□□ 0.3
Cux1P53564 Gm4705-201ENSMUST00000177415 354 ntBASIC16.9■□□□□ 0.3
Cux1P53564 Gm20091-201ENSMUST00000179683 189 ntBASIC16.9■□□□□ 0.3
Cux1P53564 Gm4960-201ENSMUST00000182928 1001 ntBASIC16.9■□□□□ 0.3
Cux1P53564 Gm28415-201ENSMUST00000187528 452 ntTSL 2 BASIC16.9■□□□□ 0.3
Cux1P53564 Cpsf4l-201ENSMUST00000018871 1235 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 AC241616.1-201ENSMUST00000213741 166 ntBASIC16.9■□□□□ 0.3
Cux1P53564 AC122840.4-201ENSMUST00000221310 1285 ntTSL 5 BASIC16.9■□□□□ 0.3
Cux1P53564 AC133496.1-201ENSMUST00000223891 743 ntBASIC16.9■□□□□ 0.3
Cux1P53564 Olfr456-201ENSMUST00000057251 1052 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Cux1P53564 Atp6v1e2-201ENSMUST00000065758 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC16.9■□□□□ 0.3
Cux1P53564 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cux1P53564 Asgr1-202ENSMUST00000092959 1308 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.3
Cux1P53564 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Cux1P53564 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Cux1P53564 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Cux1P53564 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Ntrk2-208ENSMUST00000225583 2719 ntBASIC16.89■□□□□ 0.29
Cux1P53564 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Gm13722-201ENSMUST00000117964 3066 ntBASIC16.89■□□□□ 0.29
Cux1P53564 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Gm4943-201ENSMUST00000132879 424 ntBASIC16.89■□□□□ 0.29
Cux1P53564 Gm12676-201ENSMUST00000149078 808 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Slc1a3-208ENSMUST00000157065 728 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Gm44540-201ENSMUST00000205640 354 ntBASIC16.89■□□□□ 0.29
Cux1P53564 Lsm3-205ENSMUST00000206947 618 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Madcam1-202ENSMUST00000217748 944 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 AC155300.1-201ENSMUST00000219134 480 ntBASIC16.89■□□□□ 0.29
Cux1P53564 Ifne-201ENSMUST00000056014 664 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Cux1P53564 Klk1b22-201ENSMUST00000077528 855 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Gm9701-201ENSMUST00000077976 427 ntBASIC16.89■□□□□ 0.29
Cux1P53564 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Cux1P53564 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Cux1P53564 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cux1P53564 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
Cux1P53564 Rep15-201ENSMUST00000036194 1662 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Cux1P53564 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Slitrk4-202ENSMUST00000114679 3513 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 C920021L13Rik-201ENSMUST00000120398 1723 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Gpr19-213ENSMUST00000215088 1484 ntTSL 5 BASIC16.88■□□□□ 0.29
Cux1P53564 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Gm14997-201ENSMUST00000119232 636 ntBASIC16.88■□□□□ 0.29
Cux1P53564 Gm14650-201ENSMUST00000120400 889 ntBASIC16.88■□□□□ 0.29
Cux1P53564 Mc5r-201ENSMUST00000172148 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Gm22876-201ENSMUST00000175450 298 ntBASIC16.88■□□□□ 0.29
Cux1P53564 Gm29808-201ENSMUST00000194419 468 ntBASIC16.88■□□□□ 0.29
Cux1P53564 Gm42803-201ENSMUST00000201051 451 ntBASIC16.88■□□□□ 0.29
Cux1P53564 Gm44388-201ENSMUST00000204350 258 ntBASIC16.88■□□□□ 0.29
Cux1P53564 Gm45893-201ENSMUST00000211899 247 ntBASIC16.88■□□□□ 0.29
Cux1P53564 4930447F24Rik-201ENSMUST00000194140 1341 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Gm37542-201ENSMUST00000192563 2832 ntBASIC16.88■□□□□ 0.29
Cux1P53564 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Cux1P53564 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Cux1P53564 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Cux1P53564 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
Cux1P53564 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC16.88■□□□□ 0.29
Cux1P53564 Matn2-203ENSMUST00000226766 3252 ntBASIC16.88■□□□□ 0.29
Cux1P53564 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
Cux1P53564 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cux1P53564 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Cux1P53564 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC16.87■□□□□ 0.29
Cux1P53564 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Cux1P53564 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Cux1P53564 Ntm-202ENSMUST00000115236 1072 ntTSL 5 BASIC16.87■□□□□ 0.29
Cux1P53564 Gm14231-201ENSMUST00000120090 592 ntBASIC16.87■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms