Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm1840-201ENSMUST00000051687 1432 ntBASIC9.02□□□□□ -0.97
Hoxd3P09027 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC9.02□□□□□ -0.97
Hoxd3P09027 Gm5860-202ENSMUST00000151038 1711 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
Hoxd3P09027 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Gm12586-201ENSMUST00000117328 1316 ntBASIC9.02□□□□□ -0.97
Hoxd3P09027 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
Hoxd3P09027 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC9.02□□□□□ -0.97
Hoxd3P09027 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC9.02□□□□□ -0.97
Hoxd3P09027 AC156031.2-201ENSMUST00000213107 3310 ntBASIC9.02□□□□□ -0.97
Hoxd3P09027 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Col6a6-203ENSMUST00000166431 7098 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm6903-201ENSMUST00000160509 1366 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Chic1-201ENSMUST00000116547 7375 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Mrps36-ps2-201ENSMUST00000118658 309 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm14098-201ENSMUST00000119295 623 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm15725-201ENSMUST00000119947 1090 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm11246-201ENSMUST00000120880 345 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC9.01□□□□□ -0.97
Hoxd3P09027 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm24844-201ENSMUST00000158679 127 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Vmn1r-ps62-201ENSMUST00000173275 910 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm4654-201ENSMUST00000183305 982 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm29277-201ENSMUST00000185226 602 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm29089-201ENSMUST00000186209 602 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm43186-201ENSMUST00000198130 824 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm18330-201ENSMUST00000199246 547 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm45078-201ENSMUST00000205343 546 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm18636-201ENSMUST00000218846 1066 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 AC168274.2-201ENSMUST00000219252 338 ntTSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 AC153936.1-201ENSMUST00000219874 395 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Cd84-201ENSMUST00000042302 1019 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Olfr1231-201ENSMUST00000099786 942 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm44999-201ENSMUST00000207456 1493 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC9.01□□□□□ -0.97
Hoxd3P09027 Gm9387-201ENSMUST00000098624 1320 ntBASIC9.01□□□□□ -0.97
Hoxd3P09027 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
Hoxd3P09027 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 AC157950.1-201ENSMUST00000217561 2168 ntBASIC9□□□□□ -0.97
Hoxd3P09027 Bahcc1-203ENSMUST00000122148 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Hoxd3P09027 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC9□□□□□ -0.97
Hoxd3P09027 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC9□□□□□ -0.97
Hoxd3P09027 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 66.9 ms