Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC21.28■■□□□ 1
Ddx56Q9D0R4 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Ddx56Q9D0R4 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC21.27■■□□□ 1
Ddx56Q9D0R4 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Ddx56Q9D0R4 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddx56Q9D0R4 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddx56Q9D0R4 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ddx56Q9D0R4 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ddx56Q9D0R4 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Ddx56Q9D0R4 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.25■□□□□ 0.99
Ddx56Q9D0R4 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ddx56Q9D0R4 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.25■□□□□ 0.99
Ddx56Q9D0R4 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ddx56Q9D0R4 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Ddx56Q9D0R4 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.25■□□□□ 0.99
Ddx56Q9D0R4 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddx56Q9D0R4 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx56Q9D0R4 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx56Q9D0R4 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx56Q9D0R4 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC21.23■□□□□ 0.99
Ddx56Q9D0R4 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.23■□□□□ 0.99
Ddx56Q9D0R4 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.23■□□□□ 0.99
Ddx56Q9D0R4 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.23■□□□□ 0.99
Ddx56Q9D0R4 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.23■□□□□ 0.99
Ddx56Q9D0R4 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx56Q9D0R4 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddx56Q9D0R4 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Ddx56Q9D0R4 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx56Q9D0R4 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx56Q9D0R4 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx56Q9D0R4 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.22■□□□□ 0.99
Ddx56Q9D0R4 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx56Q9D0R4 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Ddx56Q9D0R4 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx56Q9D0R4 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx56Q9D0R4 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx56Q9D0R4 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ddx56Q9D0R4 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx56Q9D0R4 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx56Q9D0R4 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx56Q9D0R4 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx56Q9D0R4 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx56Q9D0R4 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC21.21■□□□□ 0.99
Ddx56Q9D0R4 Gm37035-201ENSMUST00000194809 2148 ntBASIC21.21■□□□□ 0.99
Ddx56Q9D0R4 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Ddx56Q9D0R4 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddx56Q9D0R4 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC21.21■□□□□ 0.99
Ddx56Q9D0R4 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx56Q9D0R4 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx56Q9D0R4 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx56Q9D0R4 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.2■□□□□ 0.98
Ddx56Q9D0R4 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx56Q9D0R4 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.2■□□□□ 0.98
Ddx56Q9D0R4 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx56Q9D0R4 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
Ddx56Q9D0R4 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddx56Q9D0R4 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.2■□□□□ 0.98
Ddx56Q9D0R4 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Ddx56Q9D0R4 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddx56Q9D0R4 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddx56Q9D0R4 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddx56Q9D0R4 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddx56Q9D0R4 Gm43530-201ENSMUST00000195920 274 ntBASIC21.19■□□□□ 0.98
Ddx56Q9D0R4 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddx56Q9D0R4 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddx56Q9D0R4 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddx56Q9D0R4 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx56Q9D0R4 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx56Q9D0R4 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx56Q9D0R4 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddx56Q9D0R4 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ddx56Q9D0R4 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms