Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rpa1Q8VEE4 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rpa1Q8VEE4 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rpa1Q8VEE4 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.28■□□□□ 0.84
Rpa1Q8VEE4 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rpa1Q8VEE4 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rpa1Q8VEE4 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rpa1Q8VEE4 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rpa1Q8VEE4 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rpa1Q8VEE4 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Rpa1Q8VEE4 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rpa1Q8VEE4 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rpa1Q8VEE4 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rpa1Q8VEE4 Gm11175-201ENSMUST00000116172 543 ntBASIC20.27■□□□□ 0.84
Rpa1Q8VEE4 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rpa1Q8VEE4 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Rpa1Q8VEE4 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Rpa1Q8VEE4 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Rpa1Q8VEE4 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Rpa1Q8VEE4 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Rpa1Q8VEE4 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Rpa1Q8VEE4 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Rpa1Q8VEE4 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
Rpa1Q8VEE4 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Rpa1Q8VEE4 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Rpa1Q8VEE4 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.26■□□□□ 0.83
Rpa1Q8VEE4 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.26■□□□□ 0.83
Rpa1Q8VEE4 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.26■□□□□ 0.83
Rpa1Q8VEE4 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.26■□□□□ 0.83
Rpa1Q8VEE4 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Rpa1Q8VEE4 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rpa1Q8VEE4 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rpa1Q8VEE4 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rpa1Q8VEE4 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.25■□□□□ 0.83
Rpa1Q8VEE4 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rpa1Q8VEE4 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rpa1Q8VEE4 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rpa1Q8VEE4 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.25■□□□□ 0.83
Rpa1Q8VEE4 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rpa1Q8VEE4 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rpa1Q8VEE4 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rpa1Q8VEE4 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rpa1Q8VEE4 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.24■□□□□ 0.83
Rpa1Q8VEE4 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Rpa1Q8VEE4 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rpa1Q8VEE4 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Rpa1Q8VEE4 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Rpa1Q8VEE4 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Rpa1Q8VEE4 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
Rpa1Q8VEE4 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rpa1Q8VEE4 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rpa1Q8VEE4 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rpa1Q8VEE4 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rpa1Q8VEE4 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rpa1Q8VEE4 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.23■□□□□ 0.83
Rpa1Q8VEE4 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Rpa1Q8VEE4 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rpa1Q8VEE4 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Rpa1Q8VEE4 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC20.23■□□□□ 0.83
Rpa1Q8VEE4 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Rpa1Q8VEE4 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rpa1Q8VEE4 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rpa1Q8VEE4 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Rpa1Q8VEE4 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rpa1Q8VEE4 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rpa1Q8VEE4 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.21■□□□□ 0.83
Rpa1Q8VEE4 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rpa1Q8VEE4 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rpa1Q8VEE4 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rpa1Q8VEE4 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rpa1Q8VEE4 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rpa1Q8VEE4 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Rpa1Q8VEE4 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Rpa1Q8VEE4 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Rpa1Q8VEE4 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rpa1Q8VEE4 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.2■□□□□ 0.82
Rpa1Q8VEE4 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rpa1Q8VEE4 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rpa1Q8VEE4 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rpa1Q8VEE4 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.19■□□□□ 0.82
Rpa1Q8VEE4 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rpa1Q8VEE4 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rpa1Q8VEE4 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Rpa1Q8VEE4 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rpa1Q8VEE4 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rpa1Q8VEE4 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rpa1Q8VEE4 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rpa1Q8VEE4 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms