Protein–RNA interactions for Protein: Q8CDY9

Pcdhb7, Protocadherin beta 7, mousemouse

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb7Q8CDY9 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdhb7Q8CDY9 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdhb7Q8CDY9 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Pcdhb7Q8CDY9 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Pcdhb7Q8CDY9 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdhb7Q8CDY9 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdhb7Q8CDY9 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdhb7Q8CDY9 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Pcdhb7Q8CDY9 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Pcdhb7Q8CDY9 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.18■□□□□ 0.82
Pcdhb7Q8CDY9 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdhb7Q8CDY9 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdhb7Q8CDY9 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdhb7Q8CDY9 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdhb7Q8CDY9 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdhb7Q8CDY9 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdhb7Q8CDY9 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdhb7Q8CDY9 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdhb7Q8CDY9 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdhb7Q8CDY9 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 Etf1-202ENSMUST00000180351 108 ntBASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 Gm7417-201ENSMUST00000192950 473 ntBASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Pcdhb7Q8CDY9 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Pcdhb7Q8CDY9 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdhb7Q8CDY9 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Pcdhb7Q8CDY9 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdhb7Q8CDY9 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC20.15■□□□□ 0.82
Pcdhb7Q8CDY9 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdhb7Q8CDY9 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC20.15■□□□□ 0.82
Pcdhb7Q8CDY9 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdhb7Q8CDY9 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Pcdhb7Q8CDY9 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdhb7Q8CDY9 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
Pcdhb7Q8CDY9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Pcdhb7Q8CDY9 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
Pcdhb7Q8CDY9 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdhb7Q8CDY9 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdhb7Q8CDY9 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdhb7Q8CDY9 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdhb7Q8CDY9 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.14■□□□□ 0.81
Pcdhb7Q8CDY9 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdhb7Q8CDY9 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Pcdhb7Q8CDY9 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Pcdhb7Q8CDY9 Iqck-206ENSMUST00000208658 2891 ntBASIC20.13■□□□□ 0.81
Pcdhb7Q8CDY9 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdhb7Q8CDY9 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdhb7Q8CDY9 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.13■□□□□ 0.81
Pcdhb7Q8CDY9 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC20.13■□□□□ 0.81
Pcdhb7Q8CDY9 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdhb7Q8CDY9 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdhb7Q8CDY9 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdhb7Q8CDY9 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdhb7Q8CDY9 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Pcdhb7Q8CDY9 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Pcdhb7Q8CDY9 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhb7Q8CDY9 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhb7Q8CDY9 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhb7Q8CDY9 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhb7Q8CDY9 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhb7Q8CDY9 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhb7Q8CDY9 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhb7Q8CDY9 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhb7Q8CDY9 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhb7Q8CDY9 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdhb7Q8CDY9 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdhb7Q8CDY9 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdhb7Q8CDY9 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdhb7Q8CDY9 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms