Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim28Q62318 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim28Q62318 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
Trim28Q62318 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim28Q62318 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim28Q62318 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim28Q62318 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trim28Q62318 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
Trim28Q62318 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Trim28Q62318 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Trim28Q62318 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Trim28Q62318 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC26.67■■□□□ 1.86
Trim28Q62318 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
Trim28Q62318 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Trim28Q62318 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Trim28Q62318 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
Trim28Q62318 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Trim28Q62318 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC26.66■■□□□ 1.86
Trim28Q62318 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC26.66■■□□□ 1.86
Trim28Q62318 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Trim28Q62318 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Trim28Q62318 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC26.66■■□□□ 1.86
Trim28Q62318 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Trim28Q62318 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC26.66■■□□□ 1.86
Trim28Q62318 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Trim28Q62318 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Trim28Q62318 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC26.65■■□□□ 1.86
Trim28Q62318 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Trim28Q62318 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC26.65■■□□□ 1.86
Trim28Q62318 Mir6236-201ENSMUST00000184437 123 ntBASIC26.65■■□□□ 1.86
Trim28Q62318 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC26.65■■□□□ 1.86
Trim28Q62318 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Trim28Q62318 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
Trim28Q62318 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
Trim28Q62318 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Trim28Q62318 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Trim28Q62318 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC26.64■■□□□ 1.86
Trim28Q62318 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Trim28Q62318 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
Trim28Q62318 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC26.64■■□□□ 1.86
Trim28Q62318 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC26.64■■□□□ 1.86
Trim28Q62318 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC26.64■■□□□ 1.86
Trim28Q62318 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.85
Trim28Q62318 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Trim28Q62318 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Trim28Q62318 Gm18284-201ENSMUST00000172604 624 ntBASIC26.63■■□□□ 1.85
Trim28Q62318 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC26.63■■□□□ 1.85
Trim28Q62318 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Trim28Q62318 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC26.63■■□□□ 1.85
Trim28Q62318 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Trim28Q62318 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC26.62■■□□□ 1.85
Trim28Q62318 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Trim28Q62318 Smad6-203ENSMUST00000179458 273 ntBASIC26.62■■□□□ 1.85
Trim28Q62318 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Trim28Q62318 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Trim28Q62318 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Trim28Q62318 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Trim28Q62318 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Trim28Q62318 Cdc34b-202ENSMUST00000188741 1252 ntBASIC26.61■■□□□ 1.85
Trim28Q62318 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Trim28Q62318 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Trim28Q62318 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
Trim28Q62318 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Trim28Q62318 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
Trim28Q62318 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Trim28Q62318 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Trim28Q62318 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC26.61■■□□□ 1.85
Trim28Q62318 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trim28Q62318 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC26.6■■□□□ 1.85
Trim28Q62318 Gm12504-201ENSMUST00000120860 2231 ntBASIC26.6■■□□□ 1.85
Trim28Q62318 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trim28Q62318 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
Trim28Q62318 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trim28Q62318 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trim28Q62318 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
Trim28Q62318 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trim28Q62318 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trim28Q62318 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
Trim28Q62318 Gm8495-201ENSMUST00000188740 694 ntBASIC26.59■■□□□ 1.85
Trim28Q62318 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
Trim28Q62318 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Trim28Q62318 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
Trim28Q62318 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC26.58■■□□□ 1.85
Trim28Q62318 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Trim28Q62318 Gm26833-201ENSMUST00000180899 440 ntBASIC26.58■■□□□ 1.85
Trim28Q62318 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.84
Trim28Q62318 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
Trim28Q62318 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim28Q62318 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim28Q62318 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim28Q62318 AC165080.2-201ENSMUST00000217491 1530 ntBASIC26.57■■□□□ 1.84
Trim28Q62318 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim28Q62318 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC26.57■■□□□ 1.84
Trim28Q62318 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Trim28Q62318 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim28Q62318 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim28Q62318 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim28Q62318 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Trim28Q62318 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC26.56■■□□□ 1.84
Trim28Q62318 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms