Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Nr1h4Q60641 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Nr1h4Q60641 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Nr1h4Q60641 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nr1h4Q60641 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.21■□□□□ 0.67
Nr1h4Q60641 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Nr1h4Q60641 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Mir6538-201ENSMUST00000183713 110 ntBASIC19.21■□□□□ 0.67
Nr1h4Q60641 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nr1h4Q60641 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.66
Nr1h4Q60641 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nr1h4Q60641 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nr1h4Q60641 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Nr1h4Q60641 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nr1h4Q60641 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nr1h4Q60641 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nr1h4Q60641 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nr1h4Q60641 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nr1h4Q60641 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Nr1h4Q60641 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nr1h4Q60641 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nr1h4Q60641 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nr1h4Q60641 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.19■□□□□ 0.66
Nr1h4Q60641 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nr1h4Q60641 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nr1h4Q60641 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nr1h4Q60641 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
Nr1h4Q60641 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Nr1h4Q60641 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nr1h4Q60641 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nr1h4Q60641 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Nr1h4Q60641 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nr1h4Q60641 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nr1h4Q60641 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Nr1h4Q60641 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nr1h4Q60641 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nr1h4Q60641 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Nr1h4Q60641 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nr1h4Q60641 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Nr1h4Q60641 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nr1h4Q60641 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nr1h4Q60641 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.16■□□□□ 0.66
Nr1h4Q60641 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.15■□□□□ 0.66
Nr1h4Q60641 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nr1h4Q60641 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Nr1h4Q60641 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms