Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 AC152827.1-201ENSMUST00000221143 2189 ntBASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC16.44■□□□□ 0.22
Trav8d-1Q5R1H8 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Gm5112-201ENSMUST00000204407 2368 ntBASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav8d-1Q5R1H8 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav8d-1Q5R1H8 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav8d-1Q5R1H8 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Nsd1-203ENSMUST00000224156 1149 ntBASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8d-1Q5R1H8 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC16.39■□□□□ 0.22
Trav8d-1Q5R1H8 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8d-1Q5R1H8 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
Trav8d-1Q5R1H8 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC16.38■□□□□ 0.21
Trav8d-1Q5R1H8 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trav8d-1Q5R1H8 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trav8d-1Q5R1H8 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav8d-1Q5R1H8 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav8d-1Q5R1H8 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav8d-1Q5R1H8 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms