Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Ddb1Q3U1J4 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Ddb1Q3U1J4 Gm13234-201ENSMUST00000120010 747 ntBASIC26.14■■□□□ 1.78
Ddb1Q3U1J4 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC26.14■■□□□ 1.78
Ddb1Q3U1J4 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC26.14■■□□□ 1.78
Ddb1Q3U1J4 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Ddb1Q3U1J4 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
Ddb1Q3U1J4 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.77
Ddb1Q3U1J4 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
Ddb1Q3U1J4 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
Ddb1Q3U1J4 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC26.13■■□□□ 1.77
Ddb1Q3U1J4 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Ddb1Q3U1J4 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Ddb1Q3U1J4 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Ddb1Q3U1J4 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
Ddb1Q3U1J4 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Ddb1Q3U1J4 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC26.12■■□□□ 1.77
Ddb1Q3U1J4 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Ddb1Q3U1J4 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Ddb1Q3U1J4 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
Ddb1Q3U1J4 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Ddb1Q3U1J4 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Ddb1Q3U1J4 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Ddb1Q3U1J4 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
Ddb1Q3U1J4 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Ddb1Q3U1J4 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Ddb1Q3U1J4 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Ddb1Q3U1J4 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Ddb1Q3U1J4 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC26.1■■□□□ 1.77
Ddb1Q3U1J4 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Ddb1Q3U1J4 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Ddb1Q3U1J4 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC26.09■■□□□ 1.77
Ddb1Q3U1J4 Gm14281-201ENSMUST00000121700 1294 ntBASIC26.09■■□□□ 1.77
Ddb1Q3U1J4 Gm12441-201ENSMUST00000121806 588 ntBASIC26.09■■□□□ 1.77
Ddb1Q3U1J4 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Ddb1Q3U1J4 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Ddb1Q3U1J4 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Ddb1Q3U1J4 Reep4-203ENSMUST00000226563 1444 ntBASIC26.08■■□□□ 1.77
Ddb1Q3U1J4 Gm10653-202ENSMUST00000139570 835 ntBASIC26.08■■□□□ 1.77
Ddb1Q3U1J4 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC26.08■■□□□ 1.77
Ddb1Q3U1J4 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Ddb1Q3U1J4 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Ddb1Q3U1J4 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
Ddb1Q3U1J4 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Ddb1Q3U1J4 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC26.06■■□□□ 1.76
Ddb1Q3U1J4 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Ddb1Q3U1J4 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Ddb1Q3U1J4 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC26.06■■□□□ 1.76
Ddb1Q3U1J4 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Ddb1Q3U1J4 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
Ddb1Q3U1J4 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Ddb1Q3U1J4 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
Ddb1Q3U1J4 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Ddb1Q3U1J4 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Ddb1Q3U1J4 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
Ddb1Q3U1J4 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Ddb1Q3U1J4 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Ddb1Q3U1J4 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Ddb1Q3U1J4 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
Ddb1Q3U1J4 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
Ddb1Q3U1J4 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Ddb1Q3U1J4 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Ddb1Q3U1J4 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Ddb1Q3U1J4 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC26.04■■□□□ 1.76
Ddb1Q3U1J4 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Ddb1Q3U1J4 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Ddb1Q3U1J4 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
Ddb1Q3U1J4 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
Ddb1Q3U1J4 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC26.03■■□□□ 1.76
Ddb1Q3U1J4 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
Ddb1Q3U1J4 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Ddb1Q3U1J4 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC26.02■■□□□ 1.76
Ddb1Q3U1J4 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Ddb1Q3U1J4 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Ddb1Q3U1J4 AC164883.3-201ENSMUST00000227396 1774 ntBASIC26.02■■□□□ 1.76
Ddb1Q3U1J4 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Ddb1Q3U1J4 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC26.01■■□□□ 1.75
Ddb1Q3U1J4 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC26.01■■□□□ 1.75
Ddb1Q3U1J4 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
Ddb1Q3U1J4 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Ddb1Q3U1J4 Gm7514-201ENSMUST00000209475 934 ntBASIC26.01■■□□□ 1.75
Ddb1Q3U1J4 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Ddb1Q3U1J4 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Ddb1Q3U1J4 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
Ddb1Q3U1J4 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC26.01■■□□□ 1.75
Ddb1Q3U1J4 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Ddb1Q3U1J4 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC26■■□□□ 1.75
Ddb1Q3U1J4 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC26■■□□□ 1.75
Ddb1Q3U1J4 Ap3s1-204ENSMUST00000225520 957 ntBASIC26■■□□□ 1.75
Ddb1Q3U1J4 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Ddb1Q3U1J4 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Ddb1Q3U1J4 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC26■■□□□ 1.75
Ddb1Q3U1J4 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
Ddb1Q3U1J4 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Ddb1Q3U1J4 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
Ddb1Q3U1J4 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC25.99■■□□□ 1.75
Ddb1Q3U1J4 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
Ddb1Q3U1J4 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Ddb1Q3U1J4 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC25.99■■□□□ 1.75
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms