Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col28a1Q2UY11 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Col28a1Q2UY11 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Col28a1Q2UY11 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col28a1Q2UY11 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Col28a1Q2UY11 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Col28a1Q2UY11 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col28a1Q2UY11 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Col28a1Q2UY11 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Col28a1Q2UY11 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col28a1Q2UY11 Gm9959-201ENSMUST00000068277 390 ntBASIC19.56■□□□□ 0.72
Col28a1Q2UY11 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Col28a1Q2UY11 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col28a1Q2UY11 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col28a1Q2UY11 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col28a1Q2UY11 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col28a1Q2UY11 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col28a1Q2UY11 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col28a1Q2UY11 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Col28a1Q2UY11 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col28a1Q2UY11 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Col28a1Q2UY11 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col28a1Q2UY11 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col28a1Q2UY11 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.55■□□□□ 0.72
Col28a1Q2UY11 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col28a1Q2UY11 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col28a1Q2UY11 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col28a1Q2UY11 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Col28a1Q2UY11 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col28a1Q2UY11 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Col28a1Q2UY11 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.53■□□□□ 0.72
Col28a1Q2UY11 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col28a1Q2UY11 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col28a1Q2UY11 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Col28a1Q2UY11 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col28a1Q2UY11 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col28a1Q2UY11 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col28a1Q2UY11 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col28a1Q2UY11 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC19.52■□□□□ 0.72
Col28a1Q2UY11 Gm43545-201ENSMUST00000196765 2779 ntBASIC19.52■□□□□ 0.72
Col28a1Q2UY11 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col28a1Q2UY11 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col28a1Q2UY11 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col28a1Q2UY11 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col28a1Q2UY11 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC19.5■□□□□ 0.71
Col28a1Q2UY11 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col28a1Q2UY11 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col28a1Q2UY11 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC19.49■□□□□ 0.71
Col28a1Q2UY11 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col28a1Q2UY11 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col28a1Q2UY11 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col28a1Q2UY11 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col28a1Q2UY11 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col28a1Q2UY11 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
Col28a1Q2UY11 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.48■□□□□ 0.71
Col28a1Q2UY11 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms