Protein–RNA interactions for Protein: P86448

Trim43b, Tripartite motif-containing protein 43B, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim43bP86448 Etf1-202ENSMUST00000180351 108 ntBASIC20.72■□□□□ 0.91
Trim43bP86448 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.72■□□□□ 0.91
Trim43bP86448 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Trim43bP86448 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.72■□□□□ 0.91
Trim43bP86448 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim43bP86448 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim43bP86448 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim43bP86448 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim43bP86448 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim43bP86448 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43bP86448 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.71■□□□□ 0.91
Trim43bP86448 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Trim43bP86448 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43bP86448 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43bP86448 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Trim43bP86448 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43bP86448 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43bP86448 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43bP86448 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC20.7■□□□□ 0.9
Trim43bP86448 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43bP86448 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43bP86448 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43bP86448 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC20.7■□□□□ 0.9
Trim43bP86448 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Trim43bP86448 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43bP86448 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43bP86448 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43bP86448 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43bP86448 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43bP86448 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43bP86448 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43bP86448 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43bP86448 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43bP86448 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Trim43bP86448 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim43bP86448 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim43bP86448 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim43bP86448 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim43bP86448 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.68■□□□□ 0.9
Trim43bP86448 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.68■□□□□ 0.9
Trim43bP86448 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.68■□□□□ 0.9
Trim43bP86448 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim43bP86448 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim43bP86448 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim43bP86448 AC158990.1-201ENSMUST00000221450 2016 ntBASIC20.67■□□□□ 0.9
Trim43bP86448 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim43bP86448 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim43bP86448 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim43bP86448 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim43bP86448 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim43bP86448 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim43bP86448 Gm7417-201ENSMUST00000192950 473 ntBASIC20.66■□□□□ 0.9
Trim43bP86448 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.66■□□□□ 0.9
Trim43bP86448 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim43bP86448 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim43bP86448 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim43bP86448 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim43bP86448 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.66■□□□□ 0.9
Trim43bP86448 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim43bP86448 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim43bP86448 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Trim43bP86448 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Trim43bP86448 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim43bP86448 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim43bP86448 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim43bP86448 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Trim43bP86448 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim43bP86448 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim43bP86448 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim43bP86448 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim43bP86448 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim43bP86448 Gm10399-202ENSMUST00000202768 748 ntBASIC20.65■□□□□ 0.9
Trim43bP86448 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim43bP86448 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim43bP86448 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim43bP86448 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Trim43bP86448 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim43bP86448 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim43bP86448 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim43bP86448 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.64■□□□□ 0.89
Trim43bP86448 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim43bP86448 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Trim43bP86448 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim43bP86448 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Trim43bP86448 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim43bP86448 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim43bP86448 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim43bP86448 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim43bP86448 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim43bP86448 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim43bP86448 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim43bP86448 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.63■□□□□ 0.89
Trim43bP86448 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim43bP86448 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
Trim43bP86448 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim43bP86448 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim43bP86448 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.63■□□□□ 0.89
Trim43bP86448 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.62■□□□□ 0.89
Trim43bP86448 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
Trim43bP86448 AC122428.2-201ENSMUST00000216321 1832 ntBASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms