Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Shmt1P50431 Gm45417-201ENSMUST00000209533 758 ntBASIC21.46■■□□□ 1.03
Shmt1P50431 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Shmt1P50431 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC21.45■■□□□ 1.02
Shmt1P50431 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Shmt1P50431 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Shmt1P50431 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Shmt1P50431 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Shmt1P50431 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Shmt1P50431 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Shmt1P50431 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Shmt1P50431 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Shmt1P50431 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Shmt1P50431 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Shmt1P50431 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Shmt1P50431 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Shmt1P50431 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Shmt1P50431 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Shmt1P50431 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Shmt1P50431 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Shmt1P50431 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21.43■■□□□ 1.02
Shmt1P50431 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.43■■□□□ 1.02
Shmt1P50431 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Shmt1P50431 Gm43137-201ENSMUST00000198052 594 ntBASIC21.43■■□□□ 1.02
Shmt1P50431 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Shmt1P50431 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Shmt1P50431 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC21.43■■□□□ 1.02
Shmt1P50431 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Shmt1P50431 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Shmt1P50431 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Shmt1P50431 Snhg20-203ENSMUST00000182811 2153 ntBASIC21.43■■□□□ 1.02
Shmt1P50431 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Shmt1P50431 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Shmt1P50431 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Shmt1P50431 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Shmt1P50431 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Shmt1P50431 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC21.42■■□□□ 1.02
Shmt1P50431 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.42■■□□□ 1.02
Shmt1P50431 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Shmt1P50431 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Shmt1P50431 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Shmt1P50431 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Shmt1P50431 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC21.42■■□□□ 1.02
Shmt1P50431 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Shmt1P50431 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Shmt1P50431 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Shmt1P50431 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Shmt1P50431 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Shmt1P50431 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Shmt1P50431 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Shmt1P50431 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.41■■□□□ 1.02
Shmt1P50431 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Shmt1P50431 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.41■■□□□ 1.02
Shmt1P50431 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Shmt1P50431 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Shmt1P50431 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Shmt1P50431 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Shmt1P50431 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.4■■□□□ 1.02
Shmt1P50431 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.4■■□□□ 1.02
Shmt1P50431 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Shmt1P50431 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Shmt1P50431 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Shmt1P50431 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Shmt1P50431 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Shmt1P50431 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Shmt1P50431 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Shmt1P50431 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Shmt1P50431 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.39■■□□□ 1.02
Shmt1P50431 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Shmt1P50431 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.39■■□□□ 1.02
Shmt1P50431 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Shmt1P50431 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Shmt1P50431 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Shmt1P50431 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Shmt1P50431 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Shmt1P50431 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Shmt1P50431 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shmt1P50431 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shmt1P50431 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shmt1P50431 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shmt1P50431 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Shmt1P50431 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Shmt1P50431 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shmt1P50431 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Shmt1P50431 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Shmt1P50431 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Shmt1P50431 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
Shmt1P50431 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Shmt1P50431 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Shmt1P50431 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Shmt1P50431 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC21.37■■□□□ 1.01
Shmt1P50431 Serp2-204ENSMUST00000228055 705 ntBASIC21.37■■□□□ 1.01
Shmt1P50431 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
Shmt1P50431 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shmt1P50431 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Shmt1P50431 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Shmt1P50431 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Shmt1P50431 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Shmt1P50431 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Shmt1P50431 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms