Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lire1P11260 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Lire1P11260 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lire1P11260 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lire1P11260 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lire1P11260 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lire1P11260 Golph3-202ENSMUST00000226517 2359 ntBASIC18.88■□□□□ 0.61
Lire1P11260 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lire1P11260 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lire1P11260 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.88■□□□□ 0.61
Lire1P11260 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lire1P11260 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lire1P11260 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lire1P11260 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Lire1P11260 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Lire1P11260 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lire1P11260 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lire1P11260 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Lire1P11260 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.87■□□□□ 0.61
Lire1P11260 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.87■□□□□ 0.61
Lire1P11260 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.87■□□□□ 0.61
Lire1P11260 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lire1P11260 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lire1P11260 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Lire1P11260 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Lire1P11260 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Lire1P11260 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Lire1P11260 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Lire1P11260 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Lire1P11260 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Lire1P11260 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Lire1P11260 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Lire1P11260 Gm12922-201ENSMUST00000120626 809 ntBASIC18.86■□□□□ 0.61
Lire1P11260 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Lire1P11260 AC115037.1-201ENSMUST00000223391 2173 ntBASIC18.86■□□□□ 0.61
Lire1P11260 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Lire1P11260 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
Lire1P11260 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Lire1P11260 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Lire1P11260 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Lire1P11260 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Lire1P11260 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Lire1P11260 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Lire1P11260 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Lire1P11260 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Lire1P11260 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.84■□□□□ 0.61
Lire1P11260 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Lire1P11260 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.84■□□□□ 0.61
Lire1P11260 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Lire1P11260 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Lire1P11260 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Lire1P11260 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Lire1P11260 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Lire1P11260 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Lire1P11260 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Lire1P11260 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Lire1P11260 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Lire1P11260 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Lire1P11260 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Lire1P11260 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Lire1P11260 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.83■□□□□ 0.6
Lire1P11260 Gm10399-202ENSMUST00000202768 748 ntBASIC18.83■□□□□ 0.6
Lire1P11260 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.83■□□□□ 0.6
Lire1P11260 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lire1P11260 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lire1P11260 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lire1P11260 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lire1P11260 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lire1P11260 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Lire1P11260 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lire1P11260 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Lire1P11260 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Lire1P11260 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.82■□□□□ 0.6
Lire1P11260 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC18.82■□□□□ 0.6
Lire1P11260 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lire1P11260 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lire1P11260 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lire1P11260 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
Lire1P11260 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lire1P11260 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Lire1P11260 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lire1P11260 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lire1P11260 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.81■□□□□ 0.6
Lire1P11260 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
Lire1P11260 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Lire1P11260 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Lire1P11260 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lire1P11260 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lire1P11260 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lire1P11260 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Lire1P11260 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Lire1P11260 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lire1P11260 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lire1P11260 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lire1P11260 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Lire1P11260 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
Lire1P11260 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lire1P11260 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Lire1P11260 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC18.79■□□□□ 0.6
Lire1P11260 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms