Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Chmp6P0C0A3 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Chmp6P0C0A3 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.9■■□□□ 1.1
Chmp6P0C0A3 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Chmp6P0C0A3 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Chmp6P0C0A3 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Chmp6P0C0A3 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC21.9■■□□□ 1.1
Chmp6P0C0A3 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Chmp6P0C0A3 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Chmp6P0C0A3 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Chmp6P0C0A3 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC21.89■■□□□ 1.09
Chmp6P0C0A3 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Chmp6P0C0A3 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC21.89■■□□□ 1.09
Chmp6P0C0A3 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Chmp6P0C0A3 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Chmp6P0C0A3 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.89■■□□□ 1.09
Chmp6P0C0A3 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Chmp6P0C0A3 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Chmp6P0C0A3 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Chmp6P0C0A3 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.88■■□□□ 1.09
Chmp6P0C0A3 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.88■■□□□ 1.09
Chmp6P0C0A3 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.88■■□□□ 1.09
Chmp6P0C0A3 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Chmp6P0C0A3 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
Chmp6P0C0A3 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Chmp6P0C0A3 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Chmp6P0C0A3 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Chmp6P0C0A3 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Chmp6P0C0A3 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Chmp6P0C0A3 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Chmp6P0C0A3 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Chmp6P0C0A3 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Chmp6P0C0A3 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC21.87■■□□□ 1.09
Chmp6P0C0A3 Gm9870-201ENSMUST00000063874 645 ntBASIC21.87■■□□□ 1.09
Chmp6P0C0A3 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Chmp6P0C0A3 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Chmp6P0C0A3 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Chmp6P0C0A3 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Chmp6P0C0A3 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Chmp6P0C0A3 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
Chmp6P0C0A3 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Chmp6P0C0A3 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Chmp6P0C0A3 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Chmp6P0C0A3 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Chmp6P0C0A3 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Chmp6P0C0A3 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Chmp6P0C0A3 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Chmp6P0C0A3 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
Chmp6P0C0A3 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.85■■□□□ 1.09
Chmp6P0C0A3 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Chmp6P0C0A3 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
Chmp6P0C0A3 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Chmp6P0C0A3 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Chmp6P0C0A3 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
Chmp6P0C0A3 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC21.84■■□□□ 1.09
Chmp6P0C0A3 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Chmp6P0C0A3 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Chmp6P0C0A3 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Chmp6P0C0A3 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Chmp6P0C0A3 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Chmp6P0C0A3 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Chmp6P0C0A3 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Chmp6P0C0A3 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC21.83■■□□□ 1.09
Chmp6P0C0A3 Gm9847-201ENSMUST00000052528 599 ntBASIC21.83■■□□□ 1.09
Chmp6P0C0A3 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Chmp6P0C0A3 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.83■■□□□ 1.08
Chmp6P0C0A3 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Chmp6P0C0A3 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Chmp6P0C0A3 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC21.82■■□□□ 1.08
Chmp6P0C0A3 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Chmp6P0C0A3 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Chmp6P0C0A3 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Chmp6P0C0A3 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.82■■□□□ 1.08
Chmp6P0C0A3 Gm7143-201ENSMUST00000222811 859 ntBASIC21.82■■□□□ 1.08
Chmp6P0C0A3 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Chmp6P0C0A3 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Chmp6P0C0A3 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Chmp6P0C0A3 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
Chmp6P0C0A3 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Chmp6P0C0A3 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21.81■■□□□ 1.08
Chmp6P0C0A3 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Chmp6P0C0A3 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Chmp6P0C0A3 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Chmp6P0C0A3 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Chmp6P0C0A3 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms