Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
Chd3B1AR17 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
Chd3B1AR17 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Chd3B1AR17 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Chd3B1AR17 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC19.92■□□□□ 0.78
Chd3B1AR17 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Chd3B1AR17 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Chd3B1AR17 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Chd3B1AR17 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Chd3B1AR17 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Chd3B1AR17 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.91■□□□□ 0.78
Chd3B1AR17 Gm9207-201ENSMUST00000198773 1115 ntBASIC19.91■□□□□ 0.78
Chd3B1AR17 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Chd3B1AR17 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Chd3B1AR17 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Chd3B1AR17 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Chd3B1AR17 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Chd3B1AR17 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Chd3B1AR17 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Chd3B1AR17 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC19.9■□□□□ 0.78
Chd3B1AR17 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Chd3B1AR17 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Chd3B1AR17 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Chd3B1AR17 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Chd3B1AR17 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Chd3B1AR17 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Chd3B1AR17 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Chd3B1AR17 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Chd3B1AR17 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Chd3B1AR17 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Chd3B1AR17 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC19.89■□□□□ 0.77
Chd3B1AR17 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Chd3B1AR17 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Chd3B1AR17 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Chd3B1AR17 AC165080.2-201ENSMUST00000217491 1530 ntBASIC19.89■□□□□ 0.77
Chd3B1AR17 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Chd3B1AR17 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC19.88■□□□□ 0.77
Chd3B1AR17 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Chd3B1AR17 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC19.88■□□□□ 0.77
Chd3B1AR17 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Chd3B1AR17 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Chd3B1AR17 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Chd3B1AR17 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Chd3B1AR17 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Chd3B1AR17 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC19.88■□□□□ 0.77
Chd3B1AR17 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Chd3B1AR17 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Chd3B1AR17 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
Chd3B1AR17 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.87■□□□□ 0.77
Chd3B1AR17 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chd3B1AR17 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.87■□□□□ 0.77
Chd3B1AR17 AC166356.1-201ENSMUST00000228236 1426 ntBASIC19.87■□□□□ 0.77
Chd3B1AR17 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chd3B1AR17 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chd3B1AR17 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chd3B1AR17 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Chd3B1AR17 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC19.87■□□□□ 0.77
Chd3B1AR17 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
Chd3B1AR17 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chd3B1AR17 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chd3B1AR17 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chd3B1AR17 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chd3B1AR17 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Chd3B1AR17 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.86■□□□□ 0.77
Chd3B1AR17 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Chd3B1AR17 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chd3B1AR17 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chd3B1AR17 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Chd3B1AR17 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Chd3B1AR17 Gm26571-201ENSMUST00000181399 666 ntBASIC19.85■□□□□ 0.77
Chd3B1AR17 Gm8493-201ENSMUST00000196881 489 ntBASIC19.85■□□□□ 0.77
Chd3B1AR17 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Chd3B1AR17 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Chd3B1AR17 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Chd3B1AR17 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Chd3B1AR17 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chd3B1AR17 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chd3B1AR17 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chd3B1AR17 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.84■□□□□ 0.77
Chd3B1AR17 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.84■□□□□ 0.77
Chd3B1AR17 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Chd3B1AR17 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Chd3B1AR17 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Chd3B1AR17 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Chd3B1AR17 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chd3B1AR17 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chd3B1AR17 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC19.83■□□□□ 0.77
Chd3B1AR17 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Chd3B1AR17 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Chd3B1AR17 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.83■□□□□ 0.76
Chd3B1AR17 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Chd3B1AR17 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Chd3B1AR17 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chd3B1AR17 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.82■□□□□ 0.76
Chd3B1AR17 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.82■□□□□ 0.76
Chd3B1AR17 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Chd3B1AR17 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chd3B1AR17 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chd3B1AR17 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Chd3B1AR17 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC19.82■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms