Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Smc1aQ9CU62 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Rsrc2-202ENSMUST00000057795 2270 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Lama4-201ENSMUST00000019992 6046 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Mdh1-201ENSMUST00000102874 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Gm21092-201ENSMUST00000178995 955 ntBASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Ighv5-11-201ENSMUST00000193354 371 ntBASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Gm3028-201ENSMUST00000213805 1119 ntBASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Uba1-201ENSMUST00000001989 4071 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 U2af1l4-237ENSMUST00000167042 3007 ntAPPRIS P5 TSL 2 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Gm18198-201ENSMUST00000204986 1551 ntBASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Tgoln1-201ENSMUST00000070524 5013 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Smc1aQ9CU62 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Oxct1-201ENSMUST00000110690 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 CT010480.4-201ENSMUST00000224654 2283 ntBASIC12.54□□□□□ -0.4
Smc1aQ9CU62 AC167022.1-201ENSMUST00000218647 1458 ntBASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Shc1-210ENSMUST00000191485 3154 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Tnc-203ENSMUST00000107372 7106 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm15172-201ENSMUST00000118945 1046 ntBASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm22442-201ENSMUST00000157256 144 ntBASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm4310-201ENSMUST00000177847 889 ntBASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm43520-201ENSMUST00000197996 164 ntBASIC12.54□□□□□ -0.4
Smc1aQ9CU62 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm44421-201ENSMUST00000205064 1221 ntBASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm17931-201ENSMUST00000208132 634 ntBASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 CT485606.1-201ENSMUST00000213187 878 ntBASIC12.54□□□□□ -0.4
Smc1aQ9CU62 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Myt1l-201ENSMUST00000021009 5027 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Tox4-201ENSMUST00000022766 5350 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Smc1aQ9CU62 Caprin1-202ENSMUST00000111147 4069 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smc1aQ9CU62 Zfp36-201ENSMUST00000051241 2790 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smc1aQ9CU62 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smc1aQ9CU62 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smc1aQ9CU62 Fhdc1-201ENSMUST00000091002 4162 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Smc1aQ9CU62 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Smc1aQ9CU62 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Smc1aQ9CU62 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 59.7 ms