Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Fam107b-202ENSMUST00000115052 861 ntTSL 3 BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 1700071K01Rik-201ENSMUST00000117522 819 ntBASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm12948-201ENSMUST00000119406 682 ntBASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm6758-201ENSMUST00000119643 1055 ntBASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm12136-201ENSMUST00000120460 1209 ntBASIC15.28■□□□□ 0.04
Usp40Q8BWR4 9230111E07Rik-201ENSMUST00000124850 811 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Tspan32os-201ENSMUST00000131740 975 ntTSL 2 BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Smim6-201ENSMUST00000132961 978 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm11634-201ENSMUST00000154147 755 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm25569-201ENSMUST00000157175 131 ntBASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm16547-201ENSMUST00000159474 293 ntBASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm44605-201ENSMUST00000206892 949 ntBASIC15.28■□□□□ 0.04
Usp40Q8BWR4 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm40879-201ENSMUST00000220759 612 ntBASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Crygf-201ENSMUST00000027082 627 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Clu-201ENSMUST00000022616 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm43931-201ENSMUST00000204817 2870 ntBASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Bpifb1-202ENSMUST00000081816 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Plekhg5-202ENSMUST00000105661 3842 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Ptbp1-206ENSMUST00000165704 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Gm14113-201ENSMUST00000121399 976 ntBASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Mir1893-201ENSMUST00000122565 83 ntBASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Treml4-203ENSMUST00000136272 811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Treml4-206ENSMUST00000154335 838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Prm2-202ENSMUST00000189593 674 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Gm42751-201ENSMUST00000198065 559 ntBASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Tpi-rs4-201ENSMUST00000213734 720 ntBASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Gm31557-201ENSMUST00000213825 973 ntTSL 5 BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Gm19640-201ENSMUST00000214849 464 ntBASIC15.27■□□□□ 0.04
Usp40Q8BWR4 E330021D16Rik-201ENSMUST00000058713 1116 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Foxp1-201ENSMUST00000074346 2118 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Dcpp2-201ENSMUST00000088598 611 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Usp40Q8BWR4 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Rufy2-202ENSMUST00000119567 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Usp40Q8BWR4 Gm11033-201ENSMUST00000127757 1445 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Spata16-202ENSMUST00000108305 1789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Gm5766-201ENSMUST00000160520 1977 ntBASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Ighv13-1-201ENSMUST00000103480 294 ntBASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Ifitm7-201ENSMUST00000117803 853 ntAPPRIS P5 TSL 1 (best) BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC15.26■□□□□ 0.03
Usp40Q8BWR4 n-R5s130-201ENSMUST00000178128 119 ntBASIC15.26■□□□□ 0.03
Usp40Q8BWR4 Gm24312-201ENSMUST00000178677 119 ntBASIC15.26■□□□□ 0.03
Usp40Q8BWR4 n-R5s106-201ENSMUST00000179060 119 ntBASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms