Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC11.81□□□□□ -0.52
Shmt1P50431 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC11.81□□□□□ -0.52
Shmt1P50431 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm10020-201ENSMUST00000081993 612 ntBASIC11.81□□□□□ -0.52
Shmt1P50431 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Shmt1P50431 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Dcun1d2-206ENSMUST00000203604 2112 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Shmt1P50431 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Shmt1P50431 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Shmt1P50431 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Shmt1P50431 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Shmt1P50431 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC11.8□□□□□ -0.52
Shmt1P50431 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Shmt1P50431 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
Shmt1P50431 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Gm25880-201ENSMUST00000104331 132 ntBASIC11.8□□□□□ -0.52
Shmt1P50431 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Shmt1P50431 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Snord23-201ENSMUST00000116828 109 ntBASIC11.8□□□□□ -0.52
Shmt1P50431 Gm14270-201ENSMUST00000118388 846 ntBASIC11.8□□□□□ -0.52
Shmt1P50431 Gm12663-201ENSMUST00000118481 958 ntBASIC11.8□□□□□ -0.52
Shmt1P50431 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Mrgpra2a-201ENSMUST00000159004 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Mir99ahg-209ENSMUST00000182820 835 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Gm7183-201ENSMUST00000213870 1005 ntBASIC11.8□□□□□ -0.52
Shmt1P50431 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Gm19178-201ENSMUST00000217524 1819 ntBASIC11.8□□□□□ -0.52
Shmt1P50431 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Shmt1P50431 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Shmt1P50431 Ido1-202ENSMUST00000110667 1656 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Shmt1P50431 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Shmt1P50431 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Shmt1P50431 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Shmt1P50431 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC11.79□□□□□ -0.52
Shmt1P50431 Slc37a4-201ENSMUST00000165839 2086 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Ighv8-11-201ENSMUST00000103536 358 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Shmt1P50431 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Shmt1P50431 Gm14592-201ENSMUST00000117201 560 ntBASIC11.79□□□□□ -0.52
Shmt1P50431 Gm12986-201ENSMUST00000119037 967 ntBASIC11.79□□□□□ -0.52
Shmt1P50431 Gm9673-201ENSMUST00000119287 781 ntBASIC11.79□□□□□ -0.52
Shmt1P50431 Gm12274-201ENSMUST00000120062 385 ntBASIC11.79□□□□□ -0.52
Shmt1P50431 Gm4917-201ENSMUST00000121452 650 ntBASIC11.79□□□□□ -0.52
Shmt1P50431 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Shmt1P50431 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC11.79□□□□□ -0.52
Shmt1P50431 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Shmt1P50431 Sbsn-205ENSMUST00000182721 677 ntAPPRIS ALT2 TSL 3 BASIC11.79□□□□□ -0.52
Shmt1P50431 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Gm18776-201ENSMUST00000188833 654 ntBASIC11.79□□□□□ -0.52
Shmt1P50431 Gm42655-201ENSMUST00000202782 1134 ntBASIC11.79□□□□□ -0.52
Shmt1P50431 Gm7525-201ENSMUST00000219425 454 ntBASIC11.79□□□□□ -0.52
Shmt1P50431 Gm18968-201ENSMUST00000221319 862 ntBASIC11.79□□□□□ -0.52
Shmt1P50431 AC129308.3-201ENSMUST00000225652 524 ntBASIC11.79□□□□□ -0.52
Shmt1P50431 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Shmt1P50431 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms