Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm13097-201ENSMUST00000210722 397 ntBASIC13.32□□□□□ -0.28
Rfx1P48377 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Rfx1P48377 Atp5g1-201ENSMUST00000090541 4715 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rfx1P48377 Clcn6-205ENSMUST00000137724 5198 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
Rfx1P48377 9530059O14Rik-201ENSMUST00000181107 3978 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Rfx1P48377 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Rfx1P48377 Zfp354b-201ENSMUST00000109124 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rfx1P48377 Csf1r-202ENSMUST00000115268 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rfx1P48377 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Rfx1P48377 Rnf2-201ENSMUST00000076110 3160 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rfx1P48377 Clip1-202ENSMUST00000063905 4589 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Rfx1P48377 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rfx1P48377 Ttll5-205ENSMUST00000110224 4647 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Rfx1P48377 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC13.31□□□□□ -0.28
Rfx1P48377 Gm11571-201ENSMUST00000136820 2396 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Gtf2ird1-204ENSMUST00000100652 3693 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Gm4846-201ENSMUST00000143922 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 L3mbtl1-201ENSMUST00000035751 2724 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Rfx1P48377 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Rfx1P48377 Dhx38-201ENSMUST00000042601 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Arsb-201ENSMUST00000091403 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Gm23949-201ENSMUST00000104027 127 ntBASIC13.31□□□□□ -0.28
Rfx1P48377 Gm12012-201ENSMUST00000118857 1066 ntBASIC13.31□□□□□ -0.28
Rfx1P48377 Gm12380-201ENSMUST00000119012 544 ntBASIC13.31□□□□□ -0.28
Rfx1P48377 Bmp5-201ENSMUST00000012281 3822 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC13.31□□□□□ -0.28
Rfx1P48377 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC13.31□□□□□ -0.28
Rfx1P48377 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC13.31□□□□□ -0.28
Rfx1P48377 Gm28071-201ENSMUST00000190355 478 ntBASIC13.31□□□□□ -0.28
Rfx1P48377 Gm7003-201ENSMUST00000195089 312 ntBASIC13.31□□□□□ -0.28
Rfx1P48377 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
Rfx1P48377 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Klhl18-205ENSMUST00000198400 4638 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 P2ry1-202ENSMUST00000193201 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Plekhg4-206ENSMUST00000214056 3654 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Rfx1P48377 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC13.31□□□□□ -0.28
Rfx1P48377 Ern2-201ENSMUST00000033153 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Metap1-203ENSMUST00000197531 3708 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC13.31□□□□□ -0.28
Rfx1P48377 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rfx1P48377 Sorbs3-203ENSMUST00000227653 3061 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
Rfx1P48377 Jmjd4-201ENSMUST00000045279 4315 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm10782-202ENSMUST00000223775 1480 ntBASIC13.3□□□□□ -0.28
Rfx1P48377 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Cnr2-202ENSMUST00000097843 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm31938-201ENSMUST00000218081 1818 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Ampd2-201ENSMUST00000078912 3368 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Rfx1P48377 Rasgrp4-211ENSMUST00000203380 3077 ntTSL 5 BASIC13.3□□□□□ -0.28
Rfx1P48377 Wwp2-204ENSMUST00000212205 2758 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Zfp280d-211ENSMUST00000184036 3459 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Rfx1P48377 Ndufab1-201ENSMUST00000033157 3479 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm13996-201ENSMUST00000118456 430 ntBASIC13.3□□□□□ -0.28
Rfx1P48377 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC13.3□□□□□ -0.28
Rfx1P48377 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm26361-201ENSMUST00000158868 186 ntBASIC13.3□□□□□ -0.28
Rfx1P48377 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC13.3□□□□□ -0.28
Rfx1P48377 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm38341-201ENSMUST00000195357 515 ntBASIC13.3□□□□□ -0.28
Rfx1P48377 Gm18038-201ENSMUST00000197900 485 ntBASIC13.3□□□□□ -0.28
Rfx1P48377 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC13.3□□□□□ -0.28
Rfx1P48377 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC13.3□□□□□ -0.28
Rfx1P48377 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC13.3□□□□□ -0.28
Rfx1P48377 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Zfp174-201ENSMUST00000041778 5897 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 A930007I19Rik-201ENSMUST00000180737 2319 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Armcx2-202ENSMUST00000113193 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gpr101-201ENSMUST00000057645 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Slc9a8-202ENSMUST00000073873 4429 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Rfx1P48377 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Hyou1-206ENSMUST00000161318 4489 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Rfx1P48377 Catsper1-201ENSMUST00000043380 2061 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Fam184b-201ENSMUST00000016023 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Tcp10a-203ENSMUST00000129709 1778 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Bcl7a-202ENSMUST00000117971 4642 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm5171-201ENSMUST00000214944 1415 ntBASIC13.3□□□□□ -0.28
Rfx1P48377 Kcnn3-201ENSMUST00000000811 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rfx1P48377 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC13.3□□□□□ -0.28
Rfx1P48377 CT025681.1-201ENSMUST00000225453 1855 ntBASIC13.29□□□□□ -0.28
Rfx1P48377 Prpf6-203ENSMUST00000136481 3048 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Rfx1P48377 Gm26672-201ENSMUST00000180922 2685 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Rfx1P48377 Msrb3-201ENSMUST00000092143 3843 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rfx1P48377 Tmprss2-201ENSMUST00000000395 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rfx1P48377 Slc29a3-201ENSMUST00000117513 5240 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 7.2 ms