Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC12.98□□□□□ -0.33
Traf1P39428 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC12.98□□□□□ -0.33
Traf1P39428 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Traf1P39428 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC12.98□□□□□ -0.33
Traf1P39428 AC122024.3-201ENSMUST00000217719 294 ntBASIC12.98□□□□□ -0.33
Traf1P39428 AC154184.3-201ENSMUST00000225620 1090 ntBASIC12.98□□□□□ -0.33
Traf1P39428 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Traf1P39428 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Traf1P39428 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Traf1P39428 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Traf1P39428 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Traf1P39428 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC12.98□□□□□ -0.33
Traf1P39428 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Traf1P39428 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Traf1P39428 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Pde1c-201ENSMUST00000044505 3907 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC12.97□□□□□ -0.33
Traf1P39428 C1qtnf7-202ENSMUST00000121872 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC12.97□□□□□ -0.33
Traf1P39428 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC12.97□□□□□ -0.33
Traf1P39428 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC12.97□□□□□ -0.33
Traf1P39428 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC12.97□□□□□ -0.33
Traf1P39428 Gm26982-201ENSMUST00000182250 1151 ntBASIC12.97□□□□□ -0.33
Traf1P39428 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Gm18776-201ENSMUST00000188833 654 ntBASIC12.97□□□□□ -0.33
Traf1P39428 Gm6423-201ENSMUST00000204315 934 ntBASIC12.97□□□□□ -0.33
Traf1P39428 Gm5599-201ENSMUST00000209602 788 ntBASIC12.97□□□□□ -0.33
Traf1P39428 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Traf1P39428 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
Traf1P39428 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Traf1P39428 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Sez6l-206ENSMUST00000212758 2664 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC12.97□□□□□ -0.33
Traf1P39428 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Traf1P39428 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC12.97□□□□□ -0.33
Traf1P39428 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Traf1P39428 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC12.96□□□□□ -0.33
Traf1P39428 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Traf1P39428 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Traf1P39428 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Traf1P39428 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Traf1P39428 Gm43963-201ENSMUST00000203466 2488 ntBASIC12.96□□□□□ -0.33
Traf1P39428 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC12.96□□□□□ -0.33
Traf1P39428 Gm14398-201ENSMUST00000117287 1073 ntBASIC12.96□□□□□ -0.33
Traf1P39428 Gm12791-201ENSMUST00000120788 655 ntBASIC12.96□□□□□ -0.33
Traf1P39428 Gm4917-201ENSMUST00000121452 650 ntBASIC12.96□□□□□ -0.33
Traf1P39428 Mir1905-201ENSMUST00000122779 82 ntBASIC12.96□□□□□ -0.33
Traf1P39428 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Traf1P39428 Gm9081-201ENSMUST00000182346 991 ntBASIC12.96□□□□□ -0.33
Traf1P39428 Gm30946-201ENSMUST00000198288 724 ntBASIC12.96□□□□□ -0.33
Traf1P39428 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC12.96□□□□□ -0.33
Traf1P39428 Gm18514-201ENSMUST00000218980 436 ntBASIC12.96□□□□□ -0.33
Traf1P39428 AC122035.1-201ENSMUST00000227576 1016 ntBASIC12.96□□□□□ -0.33
Traf1P39428 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms