Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Gm11531-201ENSMUST00000117614 555 ntBASIC9.2□□□□□ -0.94
Hmgb3O54879 Gm12463-201ENSMUST00000118271 849 ntBASIC9.2□□□□□ -0.94
Hmgb3O54879 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC9.2□□□□□ -0.94
Hmgb3O54879 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Gm43966-201ENSMUST00000203301 612 ntBASIC9.2□□□□□ -0.94
Hmgb3O54879 Gm5950-201ENSMUST00000213337 772 ntBASIC9.2□□□□□ -0.94
Hmgb3O54879 Gm7293-201ENSMUST00000216682 1007 ntBASIC9.2□□□□□ -0.94
Hmgb3O54879 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Slc10a3-203ENSMUST00000114146 1902 ntAPPRIS P2 TSL 5 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Trim16-202ENSMUST00000072639 1929 ntTSL 2 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC9.2□□□□□ -0.94
Hmgb3O54879 Pard3-201ENSMUST00000026921 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Nktr-201ENSMUST00000035112 7022 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
Hmgb3O54879 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Gdf2-201ENSMUST00000100720 2988 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
Hmgb3O54879 St3gal1-201ENSMUST00000092640 4985 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 CT868720.1-201ENSMUST00000223069 2544 ntBASIC9.2□□□□□ -0.94
Hmgb3O54879 Icam1-201ENSMUST00000086399 2535 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Gm26822-201ENSMUST00000181732 3374 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hmgb3O54879 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 BC049352-203ENSMUST00000171799 1714 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Tial1-202ENSMUST00000106226 4451 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Nrg1-213ENSMUST00000208617 2787 ntTSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Slc7a4-201ENSMUST00000063544 2758 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Armc8-202ENSMUST00000185524 2820 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Bco1-203ENSMUST00000176860 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Ppp2r2a-201ENSMUST00000089230 4010 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Ptcd1-201ENSMUST00000031628 3087 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Ccnd2-201ENSMUST00000000188 6330 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Slc25a44-204ENSMUST00000195657 3504 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC9.19□□□□□ -0.94
Hmgb3O54879 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Gm6548-201ENSMUST00000167498 1165 ntBASIC9.19□□□□□ -0.94
Hmgb3O54879 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Uba52-ps-201ENSMUST00000183770 379 ntBASIC9.19□□□□□ -0.94
Hmgb3O54879 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Gm37008-201ENSMUST00000195712 319 ntBASIC9.19□□□□□ -0.94
Hmgb3O54879 Gm8956-201ENSMUST00000203939 825 ntBASIC9.19□□□□□ -0.94
Hmgb3O54879 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Gm7183-201ENSMUST00000213870 1005 ntBASIC9.19□□□□□ -0.94
Hmgb3O54879 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Gm18065-201ENSMUST00000221395 526 ntBASIC9.19□□□□□ -0.94
Hmgb3O54879 AC102569.1-201ENSMUST00000221563 685 ntBASIC9.19□□□□□ -0.94
Hmgb3O54879 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Gm14150-201ENSMUST00000122404 1354 ntBASIC9.19□□□□□ -0.94
Hmgb3O54879 Rsph10b-203ENSMUST00000166847 2878 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Kif1b-202ENSMUST00000055647 5992 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Gm8131-201ENSMUST00000213783 1570 ntBASIC9.19□□□□□ -0.94
Hmgb3O54879 AC167669.2-201ENSMUST00000224417 1620 ntBASIC9.19□□□□□ -0.94
Hmgb3O54879 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Ribc2-201ENSMUST00000023067 1652 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Zfp280d-211ENSMUST00000184036 3459 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Zbtb34-201ENSMUST00000091037 6510 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Hmgb3O54879 Asxl2-207ENSMUST00000153102 4462 ntAPPRIS P2 TSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 1500012K07Rik-201ENSMUST00000181846 2345 ntTSL 5 BASIC9.19□□□□□ -0.94
Hmgb3O54879 Pygl-201ENSMUST00000071250 2825 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Muc5ac-203ENSMUST00000163321 8505 ntAPPRIS ALT2 TSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Ampd2-201ENSMUST00000078912 3368 ntAPPRIS ALT2 TSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Ptchd4-201ENSMUST00000048691 6890 ntAPPRIS P1 TSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Mical1-201ENSMUST00000019967 3563 ntAPPRIS P2 TSL 1 (best) BASIC9.18□□□□□ -0.94
Hmgb3O54879 Sptan1-201ENSMUST00000046257 7820 ntTSL 5 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Gm25214-201ENSMUST00000104573 129 ntBASIC9.18□□□□□ -0.94
Hmgb3O54879 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC9.18□□□□□ -0.94
Hmgb3O54879 Zfp354b-201ENSMUST00000109124 2455 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
Retrieved 100 of 76,532 protein–RNA pairs in 79.7 ms