Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Nrf1-208ENSMUST00000115208 2492 ntTSL 5 BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Kcnma1-207ENSMUST00000172099 3354 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Srp14-202ENSMUST00000110862 587 ntTSL 2 BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Gm6441-201ENSMUST00000120983 696 ntBASIC13.09□□□□□ -0.31
Scn11aQ9R053 Gm6425-201ENSMUST00000136332 790 ntBASIC13.09□□□□□ -0.31
Scn11aQ9R053 Tctex1d1-205ENSMUST00000140654 891 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Stk33-205ENSMUST00000141210 949 ntTSL 3 BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Ttc39b-206ENSMUST00000148811 727 ntTSL 3 BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Gm5526-201ENSMUST00000153604 423 ntBASIC13.09□□□□□ -0.31
Scn11aQ9R053 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Gm16619-201ENSMUST00000181817 1210 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Gm38313-201ENSMUST00000191953 1266 ntBASIC13.09□□□□□ -0.31
Scn11aQ9R053 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Fcer2a-205ENSMUST00000208145 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 AC122840.4-201ENSMUST00000221310 1285 ntTSL 5 BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Gm3926-201ENSMUST00000223378 1123 ntBASIC13.09□□□□□ -0.31
Scn11aQ9R053 AC141884.2-201ENSMUST00000228811 775 ntBASIC13.09□□□□□ -0.31
Scn11aQ9R053 Ms4a7-202ENSMUST00000056035 882 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Gm42971-201ENSMUST00000199228 2079 ntBASIC13.09□□□□□ -0.31
Scn11aQ9R053 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Ttc1-201ENSMUST00000048578 1438 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scn11aQ9R053 Gm42833-201ENSMUST00000196019 2124 ntBASIC13.08□□□□□ -0.31
Scn11aQ9R053 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Scn11aQ9R053 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC13.08□□□□□ -0.31
Scn11aQ9R053 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Scn11aQ9R053 Klf3-202ENSMUST00000166409 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Scn11aQ9R053 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Scn11aQ9R053 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm15651-201ENSMUST00000159953 2507 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm6755-201ENSMUST00000100598 864 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm6740-201ENSMUST00000100617 864 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm11540-201ENSMUST00000117457 780 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm25288-201ENSMUST00000122800 265 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 Rptoros-201ENSMUST00000127450 1174 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Platr12-201ENSMUST00000141027 462 ntTSL 3 BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm17207-201ENSMUST00000168686 645 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm20493-201ENSMUST00000173706 213 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 n-R5s130-201ENSMUST00000178128 119 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm24312-201ENSMUST00000178677 119 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 n-R5s106-201ENSMUST00000179060 119 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 n-R5s118-201ENSMUST00000179887 119 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm28671-201ENSMUST00000187036 692 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm43097-201ENSMUST00000196867 151 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 D5Ertd605e-201ENSMUST00000201128 1081 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 AC158986.2-201ENSMUST00000227487 618 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Haao-201ENSMUST00000000687 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm25514-201ENSMUST00000083860 135 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Ugt1a7c-201ENSMUST00000058237 3231 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Gm6768-201ENSMUST00000022467 1878 ntBASIC13.08□□□□□ -0.32
Scn11aQ9R053 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Scn11aQ9R053 Nit1-203ENSMUST00000111296 1394 ntTSL 5 BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Zfp14-201ENSMUST00000077787 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Glrx2-206ENSMUST00000145969 924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Gm7928-201ENSMUST00000181249 701 ntBASIC13.07□□□□□ -0.32
Scn11aQ9R053 Gm27316-201ENSMUST00000184884 277 ntBASIC13.07□□□□□ -0.32
Scn11aQ9R053 Gm44640-201ENSMUST00000206894 247 ntBASIC13.07□□□□□ -0.32
Scn11aQ9R053 Ifnl3-201ENSMUST00000078364 582 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Nutf2-ps1-201ENSMUST00000095978 864 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Etv1-204ENSMUST00000160701 1578 ntTSL 5 BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Pigb-202ENSMUST00000098566 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Cyp2j13-202ENSMUST00000097973 1648 ntTSL 5 BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Trh-201ENSMUST00000006046 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Edn1-201ENSMUST00000021796 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Axin2-202ENSMUST00000106711 2551 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scn11aQ9R053 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms