Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm45258-201ENSMUST00000210042 853 ntBASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Gm34655-202ENSMUST00000215259 877 ntTSL 3 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Acot13-201ENSMUST00000006900 721 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Taar7a-201ENSMUST00000078532 1077 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Taar7b-201ENSMUST00000092658 1077 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Thoc6-202ENSMUST00000095579 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Gm15519-201ENSMUST00000120088 1566 ntBASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Gm31718-201ENSMUST00000212406 1646 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Kcnma1-207ENSMUST00000172099 3354 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 CT010462.1-202ENSMUST00000222225 2225 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Gsg1-203ENSMUST00000111910 1384 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Gm7541-201ENSMUST00000118361 535 ntBASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Gm12943-201ENSMUST00000119616 210 ntBASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Gm25545-201ENSMUST00000122673 323 ntBASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Bnip2-208ENSMUST00000165389 945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Gm7902-201ENSMUST00000198842 947 ntBASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Olfr171-202ENSMUST00000205467 1406 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Saa-ps-201ENSMUST00000211148 320 ntBASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Gm6831-202ENSMUST00000213025 1673 ntBASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Ugt1a7c-201ENSMUST00000058237 3231 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Hrc-201ENSMUST00000085351 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Usp40Q8BWR4 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Polr1e-203ENSMUST00000107814 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Mir671-201ENSMUST00000102432 98 ntBASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Gm11475-201ENSMUST00000118482 476 ntBASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Gm12681-201ENSMUST00000132337 700 ntTSL 3 BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Pax5-212ENSMUST00000173733 885 ntTSL 5 BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Gm9507-202ENSMUST00000180157 654 ntBASIC15.29■□□□□ 0.04
Usp40Q8BWR4 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Gm37452-201ENSMUST00000194416 1160 ntBASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Gm43667-201ENSMUST00000198616 1095 ntBASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Olfr1358-201ENSMUST00000204477 1064 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Gm32591-203ENSMUST00000204725 696 ntTSL 3 BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 AC153962.2-201ENSMUST00000219417 550 ntBASIC15.29■□□□□ 0.04
Usp40Q8BWR4 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Gm26782-203ENSMUST00000227103 751 ntBASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Elob-201ENSMUST00000069579 508 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Gm5449-201ENSMUST00000081132 357 ntBASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Prr16-201ENSMUST00000116639 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Usp40Q8BWR4 Slc40a1-201ENSMUST00000027137 3370 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Usp40Q8BWR4 Gm45776-201ENSMUST00000212366 1522 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 69 ms