Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm37651-201ENSMUST00000194679 1494 ntBASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Upf3bQ3ULL6 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Swap70-201ENSMUST00000033325 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Gm44999-201ENSMUST00000207456 1493 ntBASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Gm22334-201ENSMUST00000158070 133 ntBASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Gm17281-201ENSMUST00000180732 3589 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Dopey2-207ENSMUST00000227156 7340 ntBASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Gm37422-201ENSMUST00000193794 4718 ntBASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Tpp2-201ENSMUST00000087933 4649 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 S1pr2-201ENSMUST00000054197 6394 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 AC211878.3-201ENSMUST00000222629 2018 ntBASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Upf3bQ3ULL6 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Tmc7-201ENSMUST00000044195 4546 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Sertad3-201ENSMUST00000068641 1329 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Csf1r-202ENSMUST00000115268 4701 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Gm14460-201ENSMUST00000121511 639 ntBASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Gm3786-201ENSMUST00000202659 378 ntBASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Gm2875-201ENSMUST00000211333 360 ntBASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Mt1-202ENSMUST00000211807 1085 ntBASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 CT485607.1-201ENSMUST00000216100 85 ntBASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 AC122024.3-201ENSMUST00000217719 294 ntBASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Gm36940-201ENSMUST00000194281 2036 ntBASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Upf3bQ3ULL6 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 80.6 ms