Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Hmbox1-205ENSMUST00000176128 2958 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
Lig3P97386 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
Lig3P97386 Gm26868-201ENSMUST00000181927 2655 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.32□□□□□ -0.44
Lig3P97386 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Zcchc7-203ENSMUST00000107824 2503 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Lig3P97386 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Lig3P97386 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC12.31□□□□□ -0.44
Lig3P97386 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC12.31□□□□□ -0.44
Lig3P97386 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 AC108858.2-201ENSMUST00000228186 1425 ntBASIC12.31□□□□□ -0.44
Lig3P97386 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Mir671-201ENSMUST00000102432 98 ntBASIC12.31□□□□□ -0.44
Lig3P97386 Surf6-202ENSMUST00000114043 894 ntTSL 5 BASIC12.31□□□□□ -0.44
Lig3P97386 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC12.31□□□□□ -0.44
Lig3P97386 Gm11979-201ENSMUST00000119629 743 ntBASIC12.31□□□□□ -0.44
Lig3P97386 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Gm8451-201ENSMUST00000170338 447 ntBASIC12.31□□□□□ -0.44
Lig3P97386 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Gm9135-201ENSMUST00000182963 990 ntBASIC12.31□□□□□ -0.44
Lig3P97386 Mir6407-201ENSMUST00000184510 101 ntBASIC12.31□□□□□ -0.44
Lig3P97386 Gm5714-201ENSMUST00000197343 566 ntBASIC12.31□□□□□ -0.44
Lig3P97386 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Lig3P97386 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Lig3P97386 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Gm7536-201ENSMUST00000077389 444 ntBASIC12.31□□□□□ -0.44
Lig3P97386 Gm5453-201ENSMUST00000080866 447 ntBASIC12.31□□□□□ -0.44
Lig3P97386 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Lig3P97386 Nek4-207ENSMUST00000228328 4245 ntAPPRIS P2 BASIC12.31□□□□□ -0.44
Lig3P97386 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.31□□□□□ -0.44
Lig3P97386 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC12.31□□□□□ -0.44
Lig3P97386 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
Lig3P97386 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Lig3P97386 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC12.31□□□□□ -0.44
Lig3P97386 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Lig3P97386 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lig3P97386 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Lig3P97386 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC12.3□□□□□ -0.44
Lig3P97386 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Lig3P97386 Mid1-214ENSMUST00000163810 3689 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Lig3P97386 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 C2cd5-204ENSMUST00000203187 3494 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Lig3P97386 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Lig3P97386 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC12.3□□□□□ -0.44
Lig3P97386 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC12.3□□□□□ -0.44
Lig3P97386 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC12.3□□□□□ -0.44
Lig3P97386 Gm18711-201ENSMUST00000199341 750 ntBASIC12.3□□□□□ -0.44
Lig3P97386 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC12.3□□□□□ -0.44
Lig3P97386 Gm3017-201ENSMUST00000203603 1126 ntBASIC12.3□□□□□ -0.44
Lig3P97386 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Lig3P97386 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Lig3P97386 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 D930048N14Rik-202ENSMUST00000117859 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC12.3□□□□□ -0.44
Lig3P97386 AC173482.6-201ENSMUST00000225889 1741 ntBASIC12.3□□□□□ -0.44
Lig3P97386 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Lig3P97386 Gm19680-201ENSMUST00000095050 1513 ntBASIC12.3□□□□□ -0.44
Lig3P97386 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Lig3P97386 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC12.3□□□□□ -0.44
Lig3P97386 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lig3P97386 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 67.6 ms