Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC11.83□□□□□ -0.52
Shmt1P50431 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC11.83□□□□□ -0.52
Shmt1P50431 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC11.83□□□□□ -0.52
Shmt1P50431 Cox6b1-204ENSMUST00000208838 354 ntTSL 3 BASIC11.83□□□□□ -0.52
Shmt1P50431 Gm3619-201ENSMUST00000219947 775 ntBASIC11.83□□□□□ -0.52
Shmt1P50431 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Shmt1P50431 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Shmt1P50431 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
Shmt1P50431 C030037D09Rik-203ENSMUST00000138007 3220 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Shmt1P50431 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Gm37105-201ENSMUST00000192251 2085 ntBASIC11.83□□□□□ -0.52
Shmt1P50431 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Shmt1P50431 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Glb1l-201ENSMUST00000113623 2339 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Shmt1P50431 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Shmt1P50431 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Shmt1P50431 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Shmt1P50431 Gm14005-209ENSMUST00000224993 1832 ntBASIC11.82□□□□□ -0.52
Shmt1P50431 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Gm11340-201ENSMUST00000119226 412 ntBASIC11.82□□□□□ -0.52
Shmt1P50431 Gm4982-201ENSMUST00000160440 1098 ntBASIC11.82□□□□□ -0.52
Shmt1P50431 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Shmt1P50431 Snord55-201ENSMUST00000174939 79 ntBASIC11.82□□□□□ -0.52
Shmt1P50431 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
Shmt1P50431 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC11.82□□□□□ -0.52
Shmt1P50431 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Gm45120-201ENSMUST00000208880 408 ntBASIC11.82□□□□□ -0.52
Shmt1P50431 AC154184.3-201ENSMUST00000225620 1090 ntBASIC11.82□□□□□ -0.52
Shmt1P50431 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Shmt1P50431 Gm16380-201ENSMUST00000077997 478 ntBASIC11.82□□□□□ -0.52
Shmt1P50431 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Shmt1P50431 Zfat-205ENSMUST00000162173 3561 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Shmt1P50431 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Shmt1P50431 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Shmt1P50431 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Shmt1P50431 A930016O22Rik-202ENSMUST00000208685 2349 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Shmt1P50431 Cpeb1-209ENSMUST00000178892 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Shmt1P50431 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm18798-201ENSMUST00000187264 1700 ntBASIC11.81□□□□□ -0.52
Shmt1P50431 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC11.81□□□□□ -0.52
Shmt1P50431 Gm5739-201ENSMUST00000208601 1703 ntBASIC11.81□□□□□ -0.52
Shmt1P50431 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
Shmt1P50431 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Shmt1P50431 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC11.81□□□□□ -0.52
Shmt1P50431 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC11.81□□□□□ -0.52
Shmt1P50431 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm9884-201ENSMUST00000194343 1222 ntBASIC11.81□□□□□ -0.52
Shmt1P50431 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Shmt1P50431 Gm6439-201ENSMUST00000199849 862 ntBASIC11.81□□□□□ -0.52
Shmt1P50431 Gm3726-201ENSMUST00000203110 785 ntBASIC11.81□□□□□ -0.52
Shmt1P50431 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms