Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Gmps-201ENSMUST00000029405 8105 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Rfx3P48381 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Rfx3P48381 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Rfx3P48381 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Rfx3P48381 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC10.13□□□□□ -0.79
Rfx3P48381 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Rfx3P48381 Spata31d1a-203ENSMUST00000224982 5325 ntAPPRIS P1 BASIC10.13□□□□□ -0.79
Rfx3P48381 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Rfx3P48381 Gm45089-201ENSMUST00000208082 2040 ntBASIC10.12□□□□□ -0.79
Rfx3P48381 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Myo9a-203ENSMUST00000128341 11985 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Rfx3P48381 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Eno3-201ENSMUST00000072841 1454 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Samd4-206ENSMUST00000137543 6874 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Gm38271-201ENSMUST00000192296 1603 ntBASIC10.12□□□□□ -0.79
Rfx3P48381 Sp140-201ENSMUST00000080204 2417 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Gm12799-201ENSMUST00000118151 2560 ntBASIC10.12□□□□□ -0.79
Rfx3P48381 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC10.12□□□□□ -0.79
Rfx3P48381 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Rfx3P48381 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC10.12□□□□□ -0.79
Rfx3P48381 Gm13461-201ENSMUST00000120980 662 ntBASIC10.12□□□□□ -0.79
Rfx3P48381 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC10.12□□□□□ -0.79
Rfx3P48381 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC10.12□□□□□ -0.79
Rfx3P48381 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC10.12□□□□□ -0.79
Rfx3P48381 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC10.12□□□□□ -0.79
Rfx3P48381 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Rfx3P48381 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC10.12□□□□□ -0.79
Rfx3P48381 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC10.12□□□□□ -0.79
Rfx3P48381 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Rfx3P48381 Gm27530-201ENSMUST00000184096 98 ntBASIC10.12□□□□□ -0.79
Rfx3P48381 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 CT025694.1-201ENSMUST00000226188 934 ntBASIC10.12□□□□□ -0.79
Rfx3P48381 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
Rfx3P48381 Dclk3-201ENSMUST00000111879 3005 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Ttll5-202ENSMUST00000040273 4147 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Rfx3P48381 Gtf3c2-201ENSMUST00000088010 4552 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
Rfx3P48381 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
Rfx3P48381 Atg14-202ENSMUST00000226299 3729 ntAPPRIS P1 BASIC10.12□□□□□ -0.79
Rfx3P48381 Ccdc93-202ENSMUST00000112621 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Zscan12-203ENSMUST00000225545 4405 ntAPPRIS P1 BASIC10.12□□□□□ -0.79
Rfx3P48381 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC10.12□□□□□ -0.79
Rfx3P48381 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Rfx3P48381 Add2-204ENSMUST00000203366 3407 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
Rfx3P48381 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Nmt1-201ENSMUST00000021314 4861 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Rpap1-201ENSMUST00000048493 4744 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Son-204ENSMUST00000119368 7529 ntTSL 5 BASIC10.11□□□□□ -0.79
Rfx3P48381 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC10.11□□□□□ -0.79
Rfx3P48381 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
Rfx3P48381 Zfp354b-201ENSMUST00000109124 2455 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Mllt3-201ENSMUST00000078090 6069 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
Rfx3P48381 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
Rfx3P48381 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 CU062626.3-201ENSMUST00000225522 1411 ntBASIC10.11□□□□□ -0.79
Rfx3P48381 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Bdh1-203ENSMUST00000115227 3122 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
Rfx3P48381 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
Rfx3P48381 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC10.11□□□□□ -0.79
Rfx3P48381 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC10.11□□□□□ -0.79
Rfx3P48381 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC10.11□□□□□ -0.79
Rfx3P48381 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC10.11□□□□□ -0.79
Rfx3P48381 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC10.11□□□□□ -0.79
Rfx3P48381 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC10.11□□□□□ -0.79
Rfx3P48381 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
Rfx3P48381 Gm29499-201ENSMUST00000189151 486 ntBASIC10.11□□□□□ -0.79
Rfx3P48381 Gm28329-201ENSMUST00000191208 689 ntBASIC10.11□□□□□ -0.79
Rfx3P48381 Gm29171-201ENSMUST00000191397 486 ntBASIC10.11□□□□□ -0.79
Rfx3P48381 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC10.11□□□□□ -0.79
Rfx3P48381 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC10.11□□□□□ -0.79
Rfx3P48381 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC10.11□□□□□ -0.79
Rfx3P48381 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Rfx3P48381 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms