Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Nrg1-212ENSMUST00000208598 1778 ntTSL 5 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Zdhhc3-208ENSMUST00000147563 6987 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Cacna1c-219ENSMUST00000189389 6603 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Olfr1349-206ENSMUST00000213656 4492 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Ly75-201ENSMUST00000028362 5172 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Sez6l-201ENSMUST00000075387 6055 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Smok3a-201ENSMUST00000085886 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Gm12196-201ENSMUST00000120954 262 ntBASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Gm24749-201ENSMUST00000157838 343 ntBASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Gm43758-201ENSMUST00000199500 367 ntBASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Gm7118-201ENSMUST00000200167 1003 ntBASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Zfp36-201ENSMUST00000051241 2790 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Brat1-203ENSMUST00000110806 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Jmjd4-201ENSMUST00000045279 4315 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Zfp629-203ENSMUST00000122066 5850 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Psd-202ENSMUST00000096029 3903 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Gm44153-201ENSMUST00000204162 1580 ntBASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Zfp964-203ENSMUST00000204285 4333 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Gm18222-201ENSMUST00000202416 1387 ntBASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 C130021I20Rik-201ENSMUST00000147294 3693 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Slc17a5-201ENSMUST00000052441 3236 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ccdc28aQ8CEI3 Ccdc93-202ENSMUST00000112621 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Smg6-201ENSMUST00000045281 5848 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 CT025681.1-201ENSMUST00000225453 1855 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Scn5a-203ENSMUST00000120420 7536 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Slc1a2-201ENSMUST00000005220 2127 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm15883-201ENSMUST00000153562 1690 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Kalrn-202ENSMUST00000089655 6506 ntTSL 5 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Mcf2l-222ENSMUST00000173099 6081 ntTSL 5 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Nup210-202ENSMUST00000113509 6893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Zscan12-203ENSMUST00000225545 4405 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm4846-201ENSMUST00000143922 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gtf3c6-206ENSMUST00000217537 2526 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Snord17-201ENSMUST00000104526 238 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Ppil2-202ENSMUST00000115719 838 ntTSL 2 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm13916-201ENSMUST00000117368 628 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm18734-201ENSMUST00000172937 808 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm25890-201ENSMUST00000177643 165 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Rnu1b2-201ENSMUST00000178073 165 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Rnu1b1-201ENSMUST00000178250 165 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm22614-201ENSMUST00000178300 165 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm8100-201ENSMUST00000182906 988 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm37301-201ENSMUST00000195412 568 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm8342-201ENSMUST00000209839 757 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm22042-201ENSMUST00000082989 165 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm26110-201ENSMUST00000083971 165 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Cep350-204ENSMUST00000138762 13307 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Txlng-201ENSMUST00000041370 3862 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm13812-201ENSMUST00000118061 1347 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gm13810-201ENSMUST00000118584 1347 ntBASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Sh3d21-201ENSMUST00000094760 1859 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ccdc28aQ8CEI3 St5-201ENSMUST00000077909 4612 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms