Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Usp40Q8BWR4 Gm19027-201ENSMUST00000187291 1355 ntBASIC15.34■□□□□ 0.05
Usp40Q8BWR4 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC15.34■□□□□ 0.05
Usp40Q8BWR4 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Usp40Q8BWR4 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Usp40Q8BWR4 4930402K13Rik-201ENSMUST00000059967 1781 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Usp40Q8BWR4 Gm12159-201ENSMUST00000143869 1447 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Usp40Q8BWR4 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Usp40Q8BWR4 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.05
Usp40Q8BWR4 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Usp40Q8BWR4 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Usp40Q8BWR4 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
Usp40Q8BWR4 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.05
Usp40Q8BWR4 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Usp40Q8BWR4 Gm43051-201ENSMUST00000201096 2678 ntBASIC15.33■□□□□ 0.05
Usp40Q8BWR4 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Usp40Q8BWR4 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Usp40Q8BWR4 Nudt7-203ENSMUST00000109109 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 AC113282.5-201ENSMUST00000224330 1679 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Gm18733-202ENSMUST00000174447 401 ntBASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Platr10-202ENSMUST00000191479 818 ntBASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 1810013D15Rik-201ENSMUST00000029827 300 ntTSL 5 BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Gm45743-201ENSMUST00000212701 2795 ntBASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 CT573086.2-201ENSMUST00000227277 4992 ntBASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Usp40Q8BWR4 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Wfdc8-202ENSMUST00000109338 1794 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Scp2-202ENSMUST00000106701 772 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Ccnb1-ps-201ENSMUST00000155338 1287 ntBASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Ccnb1-207ENSMUST00000174038 1182 ntTSL 5 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Gm44552-201ENSMUST00000205458 1247 ntBASIC15.32■□□□□ 0.04
Usp40Q8BWR4 BC106175-201ENSMUST00000218578 695 ntTSL 5 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 BC106175-202ENSMUST00000219344 1213 ntBASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Triap1-201ENSMUST00000031508 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Olfr700-201ENSMUST00000079936 951 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Adam20-201ENSMUST00000056331 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Kcnk10-201ENSMUST00000110113 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Mocs2-216ENSMUST00000184672 1447 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 2610028H24Rik-202ENSMUST00000105415 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Gm5434-202ENSMUST00000222384 1451 ntBASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Gm5434-201ENSMUST00000071825 1451 ntBASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Cfap61-201ENSMUST00000116398 1561 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Vcp-rs-201ENSMUST00000120233 2406 ntBASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Fam222b-203ENSMUST00000155571 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Usp40Q8BWR4 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Cdip1-202ENSMUST00000117713 1964 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Idua-203ENSMUST00000119212 3022 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Slitrk4-202ENSMUST00000114679 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Trav12-3-201ENSMUST00000103657 442 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Cisd3-203ENSMUST00000107585 586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Gm9916-201ENSMUST00000192943 1228 ntBASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Gm29763-201ENSMUST00000205306 616 ntBASIC15.31■□□□□ 0.04
Usp40Q8BWR4 Gm33080-201ENSMUST00000205429 172 ntBASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 64.4 ms