Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Gm14592-201ENSMUST00000117201 560 ntBASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Gm16219-201ENSMUST00000120096 274 ntBASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Gm8876-201ENSMUST00000120768 1122 ntBASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Gstt3-203ENSMUST00000173537 687 ntTSL 3 BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Gm30946-201ENSMUST00000198288 724 ntBASIC12.54□□□□□ -0.4
Usp49Q6P9L4 AC166992.1-201ENSMUST00000216356 565 ntBASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Plekhg5-203ENSMUST00000105662 3933 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Gm8899-201ENSMUST00000214635 1332 ntBASIC12.54□□□□□ -0.4
Usp49Q6P9L4 AC159195.3-201ENSMUST00000225162 2211 ntBASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Gm43081-201ENSMUST00000199082 1380 ntBASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 D2hgdh-201ENSMUST00000097633 3232 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp49Q6P9L4 AA474408-201ENSMUST00000098110 3339 ntBASIC12.54□□□□□ -0.4
Usp49Q6P9L4 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Nudt7-203ENSMUST00000109109 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Gm14005-209ENSMUST00000224993 1832 ntBASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Zfp109-202ENSMUST00000206362 2932 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Gm8737-201ENSMUST00000122208 642 ntBASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Cldnd2-202ENSMUST00000206839 583 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Gm45770-201ENSMUST00000212105 616 ntBASIC12.53□□□□□ -0.4
Usp49Q6P9L4 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Acsbg1-201ENSMUST00000034822 2880 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Gm10699-201ENSMUST00000098916 2130 ntBASIC12.53□□□□□ -0.4
Usp49Q6P9L4 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Gm43937-201ENSMUST00000204640 3122 ntBASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Usp49Q6P9L4 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp49Q6P9L4 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp49Q6P9L4 Gm4900-201ENSMUST00000222046 1628 ntBASIC12.52□□□□□ -0.4
Usp49Q6P9L4 Prr30-202ENSMUST00000187304 2104 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Usp49Q6P9L4 Tasp1-202ENSMUST00000099304 2127 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Usp49Q6P9L4 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp49Q6P9L4 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp49Q6P9L4 Slc13a5-202ENSMUST00000137701 1746 ntTSL 5 BASIC12.52□□□□□ -0.41
Usp49Q6P9L4 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp49Q6P9L4 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC12.52□□□□□ -0.41
Usp49Q6P9L4 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp49Q6P9L4 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp49Q6P9L4 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp49Q6P9L4 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Usp49Q6P9L4 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Usp49Q6P9L4 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Usp49Q6P9L4 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Usp49Q6P9L4 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Usp49Q6P9L4 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 220.7 ms