Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lig3P97386 Gm17798-201ENSMUST00000182282 1035 ntBASIC12.34□□□□□ -0.43
Lig3P97386 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC12.34□□□□□ -0.43
Lig3P97386 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Lig3P97386 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lig3P97386 AC166344.1-201ENSMUST00000223745 674 ntBASIC12.34□□□□□ -0.43
Lig3P97386 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC12.34□□□□□ -0.43
Lig3P97386 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Lig3P97386 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lig3P97386 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lig3P97386 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lig3P97386 Satb1-207ENSMUST00000140979 3748 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Lig3P97386 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Lig3P97386 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Lig3P97386 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lig3P97386 Pck2-201ENSMUST00000048781 3400 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lig3P97386 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lig3P97386 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lig3P97386 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Lig3P97386 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.43
Lig3P97386 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.43
Lig3P97386 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.33□□□□□ -0.44
Lig3P97386 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Lig3P97386 Tmcc2-201ENSMUST00000045473 3410 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Gm6903-201ENSMUST00000160509 1366 ntBASIC12.33□□□□□ -0.44
Lig3P97386 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Lig3P97386 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Gm12296-201ENSMUST00000144922 3220 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Uba1-201ENSMUST00000001989 4071 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Gm14274-201ENSMUST00000117182 615 ntBASIC12.33□□□□□ -0.44
Lig3P97386 Gm12943-201ENSMUST00000119616 210 ntBASIC12.33□□□□□ -0.44
Lig3P97386 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC12.33□□□□□ -0.44
Lig3P97386 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC12.33□□□□□ -0.44
Lig3P97386 Mpv17-206ENSMUST00000201353 846 ntAPPRIS P3 TSL 3 BASIC12.33□□□□□ -0.44
Lig3P97386 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Gm18460-201ENSMUST00000208088 464 ntBASIC12.33□□□□□ -0.44
Lig3P97386 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 AC165154.1-201ENSMUST00000226661 340 ntBASIC12.33□□□□□ -0.44
Lig3P97386 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Lig3P97386 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC12.33□□□□□ -0.44
Lig3P97386 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Lig3P97386 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
Lig3P97386 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Lig3P97386 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC12.33□□□□□ -0.44
Lig3P97386 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC12.33□□□□□ -0.44
Lig3P97386 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Lig3P97386 Syn2-202ENSMUST00000169345 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lig3P97386 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Gm6124-201ENSMUST00000188240 2580 ntBASIC12.32□□□□□ -0.44
Lig3P97386 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Lig3P97386 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Lig3P97386 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Gm37660-201ENSMUST00000192754 1732 ntBASIC12.32□□□□□ -0.44
Lig3P97386 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Lig3P97386 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Nrip3-201ENSMUST00000033331 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Gm13910-201ENSMUST00000121752 1428 ntBASIC12.32□□□□□ -0.44
Lig3P97386 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC12.32□□□□□ -0.44
Lig3P97386 Gm22711-201ENSMUST00000116890 133 ntBASIC12.32□□□□□ -0.44
Lig3P97386 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC12.32□□□□□ -0.44
Lig3P97386 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC12.32□□□□□ -0.44
Lig3P97386 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Gm5537-201ENSMUST00000091117 1252 ntBASIC12.32□□□□□ -0.44
Lig3P97386 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Pla2g4c-201ENSMUST00000043612 3382 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Tnk2-207ENSMUST00000115126 4358 ntTSL 5 BASIC12.32□□□□□ -0.44
Lig3P97386 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Lig3P97386 AC129336.1-201ENSMUST00000220224 2277 ntBASIC12.32□□□□□ -0.44
Lig3P97386 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lig3P97386 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 64.6 ms