Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
Cdx2P43241 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC10.68□□□□□ -0.7
Cdx2P43241 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC10.68□□□□□ -0.7
Cdx2P43241 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Gm9544-201ENSMUST00000223349 2482 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC10.68□□□□□ -0.7
Cdx2P43241 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Gm6157-201ENSMUST00000199935 1897 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC10.68□□□□□ -0.7
Cdx2P43241 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC10.68□□□□□ -0.7
Cdx2P43241 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Gm14005-209ENSMUST00000224993 1832 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Gm45416-201ENSMUST00000209713 2201 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC10.68□□□□□ -0.7
Cdx2P43241 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC10.68□□□□□ -0.7
Cdx2P43241 Mir181d-201ENSMUST00000102383 72 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Trav10d-201ENSMUST00000103646 406 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Cdx2P43241 Gm11380-201ENSMUST00000118067 560 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 9230111E07Rik-201ENSMUST00000124850 811 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Gm13827-201ENSMUST00000148801 372 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Cdx2P43241 Mir8091-201ENSMUST00000183602 139 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Gm8384-201ENSMUST00000190905 704 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Gm42867-201ENSMUST00000202995 469 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Gm18010-201ENSMUST00000203553 202 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Gm31520-203ENSMUST00000204874 647 ntTSL 3 BASIC10.68□□□□□ -0.7
Cdx2P43241 Gm7192-201ENSMUST00000210793 1137 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Gm45527-201ENSMUST00000211052 774 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 AC159196.1-201ENSMUST00000225524 377 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 CT025618.1-203ENSMUST00000227008 589 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Nkg7-201ENSMUST00000070518 881 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Matn2-203ENSMUST00000226766 3252 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Gm43167-201ENSMUST00000202001 1606 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 CT009757.3-201ENSMUST00000223367 2320 ntBASIC10.68□□□□□ -0.7
Cdx2P43241 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
Cdx2P43241 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
Cdx2P43241 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx2P43241 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Cdx2P43241 Spata16-202ENSMUST00000108305 1789 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Wfdc8-202ENSMUST00000109338 1794 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Cdx2P43241 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Prss23os-202ENSMUST00000179361 1362 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Gm6170-201ENSMUST00000187672 1388 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
Cdx2P43241 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC10.67□□□□□ -0.7
Cdx2P43241 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Cdx2P43241 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Gm23769-201ENSMUST00000104441 121 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Snord17-201ENSMUST00000104526 238 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Krt40-202ENSMUST00000107443 1080 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Ifitm7-201ENSMUST00000117803 853 ntAPPRIS P5 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Gm6630-201ENSMUST00000119199 454 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Gm8659-201ENSMUST00000120024 1084 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Gm15982-201ENSMUST00000121681 554 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Gm12052-201ENSMUST00000142151 933 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Gm13965-201ENSMUST00000154834 576 ntTSL 3 BASIC10.67□□□□□ -0.7
Cdx2P43241 n-R5s130-201ENSMUST00000178128 119 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Gm24312-201ENSMUST00000178677 119 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 n-R5s106-201ENSMUST00000179060 119 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 n-R5s118-201ENSMUST00000179887 119 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 4931440J10Rik-201ENSMUST00000181344 891 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx2P43241 Mir6953-201ENSMUST00000184745 68 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
Cdx2P43241 1700084F23Rik-202ENSMUST00000188461 747 ntTSL 3 BASIC10.67□□□□□ -0.7
Cdx2P43241 Prm2-202ENSMUST00000189593 674 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Cdx2P43241 Ighv5-8-202ENSMUST00000191967 337 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Gm43244-201ENSMUST00000196994 1285 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Gm8234-201ENSMUST00000198523 1107 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 AI839979-201ENSMUST00000200738 654 ntTSL 2 BASIC10.67□□□□□ -0.7
Cdx2P43241 Gm43460-201ENSMUST00000202491 1057 ntBASIC10.67□□□□□ -0.7
Cdx2P43241 Gm32591-203ENSMUST00000204725 696 ntTSL 3 BASIC10.67□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms