Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Il33-202ENSMUST00000120388 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Traf1P39428 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Traf1P39428 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Traf1P39428 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Traf1P39428 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Traf1P39428 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Traf1P39428 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
Traf1P39428 Gm18294-201ENSMUST00000176980 1748 ntBASIC13.02□□□□□ -0.32
Traf1P39428 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Traf1P39428 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Traf1P39428 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Traf1P39428 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Traf1P39428 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Traf1P39428 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Traf1P39428 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Traf1P39428 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Traf1P39428 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Gm12218-201ENSMUST00000117666 399 ntBASIC13.02□□□□□ -0.33
Traf1P39428 Gm4993-201ENSMUST00000118719 1174 ntBASIC13.02□□□□□ -0.33
Traf1P39428 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC13.02□□□□□ -0.33
Traf1P39428 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC13.02□□□□□ -0.33
Traf1P39428 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
Traf1P39428 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC13.02□□□□□ -0.33
Traf1P39428 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC13.02□□□□□ -0.33
Traf1P39428 Gm43002-201ENSMUST00000200310 155 ntBASIC13.02□□□□□ -0.33
Traf1P39428 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC13.02□□□□□ -0.33
Traf1P39428 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Traf1P39428 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Traf1P39428 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC13.02□□□□□ -0.33
Traf1P39428 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Traf1P39428 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Traf1P39428 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Olfr239-202ENSMUST00000213731 3690 ntTSL 5 BASIC13.01□□□□□ -0.33
Traf1P39428 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC13.01□□□□□ -0.33
Traf1P39428 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Traf1P39428 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Traf1P39428 Gm25053-201ENSMUST00000103982 133 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Gm25922-201ENSMUST00000104281 130 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Gm25880-201ENSMUST00000104331 132 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Mir453-201ENSMUST00000104732 82 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC13.01□□□□□ -0.33
Traf1P39428 Gm9673-201ENSMUST00000119287 781 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Gm15197-201ENSMUST00000120526 478 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Gm12628-201ENSMUST00000122193 382 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Gm24679-201ENSMUST00000158762 111 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Gm6771-201ENSMUST00000182716 1001 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Gm28833-201ENSMUST00000189671 559 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Gm19166-201ENSMUST00000196041 1063 ntBASIC13.01□□□□□ -0.33
Traf1P39428 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Gm25053-202ENSMUST00000199731 132 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC13.01□□□□□ -0.33
Traf1P39428 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
Traf1P39428 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC13.01□□□□□ -0.33
Traf1P39428 Lect2-202ENSMUST00000225183 823 ntBASIC13.01□□□□□ -0.33
Traf1P39428 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Traf1P39428 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Traf1P39428 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Traf1P39428 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 82.1 ms