Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Myh8-201ENSMUST00000019625 6149 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 4930440C22Rik-201ENSMUST00000185490 1565 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Col6a3-202ENSMUST00000097653 9001 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm22920-201ENSMUST00000102175 109 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC9.05□□□□□ -0.96
Hoxd3P09027 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm14314-201ENSMUST00000118225 1015 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm15352-201ENSMUST00000118696 270 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm12105-201ENSMUST00000120846 779 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm14617-201ENSMUST00000128053 798 ntTSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm6548-201ENSMUST00000167498 1165 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm17391-201ENSMUST00000171036 126 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Vmn1r-ps18-201ENSMUST00000176901 876 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC9.05□□□□□ -0.96
Hoxd3P09027 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm26595-201ENSMUST00000181585 484 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Prl8a6-201ENSMUST00000018392 900 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm7467-201ENSMUST00000185173 652 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 1700010H22Rik-202ENSMUST00000187592 1003 ntTSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Olfr1025-ps1-201ENSMUST00000188749 921 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm38151-201ENSMUST00000195085 289 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC9.05□□□□□ -0.96
Hoxd3P09027 6030400A10Rik-201ENSMUST00000199734 1212 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm39090-202ENSMUST00000205992 508 ntTSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm6290-201ENSMUST00000207666 1158 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm45636-201ENSMUST00000210497 1064 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm19572-201ENSMUST00000214326 338 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 CT030637.1-201ENSMUST00000228016 669 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Olfr1472-201ENSMUST00000077501 945 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Prl8a6-202ENSMUST00000080762 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Olfr1475-201ENSMUST00000080801 945 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Tenm2-208ENSMUST00000163524 8668 ntAPPRIS P2 TSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm5380-201ENSMUST00000119296 2136 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Hoxd3P09027 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Gm42943-201ENSMUST00000199676 3242 ntBASIC9.05□□□□□ -0.96
Hoxd3P09027 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC9.05□□□□□ -0.96
Hoxd3P09027 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm43771-201ENSMUST00000202931 1578 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Zfp942-201ENSMUST00000074295 1461 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC9.04□□□□□ -0.96
Hoxd3P09027 Gm42852-201ENSMUST00000202649 1379 ntBASIC9.04□□□□□ -0.96
Hoxd3P09027 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Hoxd3P09027 Mir669p-2-201ENSMUST00000103868 87 ntBASIC9.04□□□□□ -0.96
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms