Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Amz1-202ENSMUST00000120630 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 AC149588.2-201ENSMUST00000228182 1859 ntBASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Plin2-201ENSMUST00000000466 1888 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Avil-201ENSMUST00000026500 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Ppp1r17-201ENSMUST00000052827 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Gnas-223ENSMUST00000185956 3729 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Gnas-224ENSMUST00000186907 3729 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Dnali1-201ENSMUST00000036383 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Brat1-203ENSMUST00000110806 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Itsn2-211ENSMUST00000219007 4977 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Llgl1-202ENSMUST00000108719 4268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Pnkd-202ENSMUST00000087225 2859 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Icam1-201ENSMUST00000086399 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Fam84a-201ENSMUST00000020926 4164 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Ifit1bl1-202ENSMUST00000168254 2215 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Kdm3a-202ENSMUST00000167220 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Lman1-201ENSMUST00000048260 3563 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Gm23596-201ENSMUST00000104304 132 ntBASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC11.07□□□□□ -0.64
Lima1Q9ERG0 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Cd63-ps-202ENSMUST00000154992 717 ntBASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 AC141438.2-201ENSMUST00000215068 271 ntBASIC11.07□□□□□ -0.64
Lima1Q9ERG0 AC160929.1-201ENSMUST00000221247 415 ntBASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 1700030K09Rik-202ENSMUST00000121902 2373 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Kansl1-201ENSMUST00000018556 5061 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Slc29a3-201ENSMUST00000117513 5240 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Gm5846-201ENSMUST00000193146 1414 ntBASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Gm1840-201ENSMUST00000051687 1432 ntBASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Gm15883-201ENSMUST00000153562 1690 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Myh1-202ENSMUST00000075734 6012 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Ankrd26-201ENSMUST00000112830 6930 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 1600014C10Rik-202ENSMUST00000165308 3335 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 1600014C10Rik-204ENSMUST00000178207 3341 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Gm10686-201ENSMUST00000215389 3247 ntBASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Lima1Q9ERG0 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Prpf6-203ENSMUST00000136481 3048 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Slc23a2-201ENSMUST00000028815 6364 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 E2f8-201ENSMUST00000058745 3691 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Mkks-202ENSMUST00000110089 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Oplah-201ENSMUST00000023222 3970 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 AC109214.1-201ENSMUST00000219520 1372 ntBASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Armc8-202ENSMUST00000185524 2820 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Nrg1-212ENSMUST00000208598 1778 ntTSL 5 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Trmt44-201ENSMUST00000030980 3790 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Psd4-201ENSMUST00000056641 4748 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Ltbp1-202ENSMUST00000112514 4870 ntAPPRIS ALT1 TSL 5 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Gm12857-201ENSMUST00000117678 592 ntBASIC11.06□□□□□ -0.64
Lima1Q9ERG0 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Mir8093-201ENSMUST00000185043 137 ntBASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Gm38228-201ENSMUST00000193169 1293 ntBASIC11.06□□□□□ -0.64
Lima1Q9ERG0 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 AC113082.1-201ENSMUST00000217324 327 ntBASIC11.06□□□□□ -0.64
Lima1Q9ERG0 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Gm8385-201ENSMUST00000058999 643 ntBASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Lima1Q9ERG0 Lpo-201ENSMUST00000103177 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms