Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Atp5g1-201ENSMUST00000090541 4715 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Polq-202ENSMUST00000071452 7290 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Gm9211-201ENSMUST00000182882 975 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 Mir7051-201ENSMUST00000184167 73 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 Gm19087-201ENSMUST00000191430 946 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Gm43916-201ENSMUST00000205062 967 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 CT485606.1-201ENSMUST00000213187 878 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Nsd1-205ENSMUST00000224693 852 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 CT025602.2-201ENSMUST00000226553 772 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 AC171241.1-201ENSMUST00000228144 1166 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 Tas2r125-201ENSMUST00000076119 937 ntAPPRIS P1 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Gm5451-201ENSMUST00000080545 579 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 Gm25007-201ENSMUST00000083808 133 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 Gm5879-201ENSMUST00000089501 1209 ntBASIC10.59□□□□□ -0.71
Clrn1Q8K445 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Slc23a2-201ENSMUST00000028815 6364 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Clrn1Q8K445 Gm9387-201ENSMUST00000098624 1320 ntBASIC10.58□□□□□ -0.71
Clrn1Q8K445 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 AC158355.1-201ENSMUST00000215895 1705 ntBASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm19178-201ENSMUST00000217524 1819 ntBASIC10.58□□□□□ -0.72
Clrn1Q8K445 Scn10a-204ENSMUST00000214408 5877 ntAPPRIS P2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Rin1-208ENSMUST00000225427 4503 ntAPPRIS P2 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm9915-201ENSMUST00000066196 1383 ntBASIC10.58□□□□□ -0.72
Clrn1Q8K445 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm23272-201ENSMUST00000104053 129 ntBASIC10.58□□□□□ -0.72
Clrn1Q8K445 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm15374-201ENSMUST00000119313 844 ntBASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm15881-201ENSMUST00000148792 942 ntBASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm42867-201ENSMUST00000202995 469 ntBASIC10.58□□□□□ -0.72
Clrn1Q8K445 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm5468-202ENSMUST00000227851 682 ntBASIC10.58□□□□□ -0.72
Clrn1Q8K445 CT030637.1-201ENSMUST00000228016 669 ntBASIC10.58□□□□□ -0.72
Clrn1Q8K445 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Madd-213ENSMUST00000111376 5927 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Madd-206ENSMUST00000099725 5905 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Ptprg-201ENSMUST00000022264 9213 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Clrn1Q8K445 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 56.5 ms