Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm7467-201ENSMUST00000185173 652 ntBASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Gm10179-201ENSMUST00000086233 688 ntBASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Tmem19-201ENSMUST00000092170 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Brf1Q8CFK2 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Brf1Q8CFK2 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Brf1Q8CFK2 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Brf1Q8CFK2 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Brf1Q8CFK2 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Brf1Q8CFK2 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC13.52□□□□□ -0.24
Brf1Q8CFK2 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Brf1Q8CFK2 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Brf1Q8CFK2 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm9133-201ENSMUST00000118289 540 ntBASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm22902-201ENSMUST00000158488 302 ntBASIC13.52□□□□□ -0.25
Brf1Q8CFK2 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm30946-201ENSMUST00000198288 724 ntBASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm44126-201ENSMUST00000204831 514 ntBASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm5599-201ENSMUST00000209602 788 ntBASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm10263-201ENSMUST00000085163 300 ntBASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm17213-201ENSMUST00000165161 1360 ntBASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Zfp286-202ENSMUST00000108705 1979 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Fam84a-201ENSMUST00000020926 4164 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Brf1Q8CFK2 Nlrp6-201ENSMUST00000106045 3823 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 AC149588.2-201ENSMUST00000228182 1859 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm44999-201ENSMUST00000207456 1493 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm12616-201ENSMUST00000118594 382 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm15131-201ENSMUST00000119124 595 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm17709-201ENSMUST00000174536 1096 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm12624-201ENSMUST00000177615 382 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm12621-201ENSMUST00000177760 382 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm12615-201ENSMUST00000177970 382 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm12622-201ENSMUST00000177975 382 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm12627-201ENSMUST00000178412 382 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm12625-201ENSMUST00000179122 382 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm12614-201ENSMUST00000179586 382 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm12613-201ENSMUST00000180323 382 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm43163-201ENSMUST00000196571 442 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm44329-201ENSMUST00000197469 112 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gm18539-201ENSMUST00000204745 1090 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 AC154680.1-201ENSMUST00000224376 859 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 AC135469.1-201ENSMUST00000225984 772 ntBASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Tmem231-201ENSMUST00000034429 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Brf1Q8CFK2 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms