Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 AC154184.3-201ENSMUST00000225620 1090 ntBASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Timd4-201ENSMUST00000068877 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Eif3a-201ENSMUST00000025955 5176 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Vps53Q8CCB4 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Rab3gap2-201ENSMUST00000069652 7052 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Zfp217-202ENSMUST00000109155 5670 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm21136-201ENSMUST00000186812 2575 ntBASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm6605-201ENSMUST00000031488 2574 ntBASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm38055-201ENSMUST00000195353 2217 ntBASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm22711-201ENSMUST00000116890 133 ntBASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm43852-201ENSMUST00000202098 917 ntBASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm43966-201ENSMUST00000203301 612 ntBASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm9661-201ENSMUST00000221611 1122 ntBASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 n-R5s211-201ENSMUST00000093689 119 ntBASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Gm37368-201ENSMUST00000193173 3212 ntBASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Klhl3-201ENSMUST00000091583 6871 ntTSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Zdhhc3-208ENSMUST00000147563 6987 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Ntrk2-207ENSMUST00000225488 4706 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Fcgbp-203ENSMUST00000138392 7926 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Fcgbp-201ENSMUST00000076648 7928 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Dchs1-201ENSMUST00000078482 10754 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Vps53Q8CCB4 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Gm13668-201ENSMUST00000119237 1001 ntBASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Gm13937-201ENSMUST00000121000 988 ntBASIC13.1□□□□□ -0.31
Vps53Q8CCB4 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Gm19009-201ENSMUST00000223072 823 ntBASIC13.1□□□□□ -0.31
Vps53Q8CCB4 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Fbxo43-201ENSMUST00000058643 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Ptpn21-202ENSMUST00000170188 5562 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Rbfox2-203ENSMUST00000166610 6573 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Mcm3ap-201ENSMUST00000170795 6427 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps53Q8CCB4 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms