Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Gm9661-201ENSMUST00000221611 1122 ntBASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 1700123L14Rik-201ENSMUST00000090061 1747 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Upf3bQ3ULL6 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Upf3bQ3ULL6 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Upf3bQ3ULL6 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.48
Upf3bQ3ULL6 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Upf3bQ3ULL6 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Upf3bQ3ULL6 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Upf3bQ3ULL6 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Upf3bQ3ULL6 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC12.02□□□□□ -0.48
Upf3bQ3ULL6 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Upf3bQ3ULL6 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Upf3bQ3ULL6 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Cfap74-209ENSMUST00000151083 5487 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Gm4900-201ENSMUST00000222046 1628 ntBASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Gstt3-203ENSMUST00000173537 687 ntTSL 3 BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Gm19246-201ENSMUST00000173599 255 ntBASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Mrip-ps-201ENSMUST00000184613 940 ntBASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Gm43349-201ENSMUST00000200047 503 ntTSL 2 BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Gm9463-201ENSMUST00000206707 601 ntBASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 AC165260.2-203ENSMUST00000224237 336 ntBASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Gm10179-201ENSMUST00000086233 688 ntBASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 AC153380.1-201ENSMUST00000214959 2364 ntBASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Gm35850-202ENSMUST00000211705 2120 ntBASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 CT010462.1-202ENSMUST00000222225 2225 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Gm19178-201ENSMUST00000217524 1819 ntBASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Upf3bQ3ULL6 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gm44153-201ENSMUST00000204162 1580 ntBASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Snord17-201ENSMUST00000104526 238 ntBASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gm14263-201ENSMUST00000117955 746 ntBASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gm12029-201ENSMUST00000120073 832 ntBASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gm5523-201ENSMUST00000180415 997 ntBASIC12.01□□□□□ -0.49
Upf3bQ3ULL6 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 77.1 ms