Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 AC159261.1-201ENSMUST00000222493 911 ntTSL 2 BASIC17.02■□□□□ 0.32
Cux1P53564 Fam3b-201ENSMUST00000049721 853 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cux1P53564 Olfr553-201ENSMUST00000098222 981 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Cux1P53564 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cux1P53564 Nrf1-201ENSMUST00000004761 1589 ntTSL 5 BASIC17.02■□□□□ 0.32
Cux1P53564 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cux1P53564 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cux1P53564 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cux1P53564 Myc-204ENSMUST00000160009 1765 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Cux1P53564 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Cux1P53564 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cux1P53564 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Cux1P53564 AC155298.2-201ENSMUST00000225485 6226 ntBASIC17.02■□□□□ 0.31
Cux1P53564 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Cux1P53564 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC17.02■□□□□ 0.31
Cux1P53564 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.31
Cux1P53564 Gm37264-201ENSMUST00000194916 2192 ntBASIC17.02■□□□□ 0.31
Cux1P53564 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cux1P53564 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cux1P53564 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Cux1P53564 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Gm6755-201ENSMUST00000100598 864 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Gm6740-201ENSMUST00000100617 864 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Pxmp4-202ENSMUST00000109703 560 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Gm11736-201ENSMUST00000121468 505 ntBASIC17.01■□□□□ 0.31
Cux1P53564 C030013C21Rik-201ENSMUST00000133400 795 ntTSL 3 BASIC17.01■□□□□ 0.31
Cux1P53564 Gm16263-201ENSMUST00000144680 502 ntTSL 3 BASIC17.01■□□□□ 0.31
Cux1P53564 Gm15258-201ENSMUST00000153801 741 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Gm4462-201ENSMUST00000166453 492 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Tmem242-202ENSMUST00000185896 780 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Gm29543-201ENSMUST00000188138 967 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Gm37858-201ENSMUST00000192759 1231 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
Cux1P53564 Gm43401-201ENSMUST00000198829 394 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Gm35611-201ENSMUST00000205323 799 ntTSL 3 BASIC17.01■□□□□ 0.31
Cux1P53564 Gm45670-201ENSMUST00000211382 711 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 AC159282.1-204ENSMUST00000219472 780 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Gm1000-202ENSMUST00000222329 757 ntTSL 5 BASIC17.01■□□□□ 0.31
Cux1P53564 Fcer1g-201ENSMUST00000079957 674 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Sectm1b-202ENSMUST00000081499 1222 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Cux1P53564 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Cux1P53564 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC17.01■□□□□ 0.31
Cux1P53564 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Gm13608-201ENSMUST00000121807 1406 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC17.01■□□□□ 0.31
Cux1P53564 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Gm6560-201ENSMUST00000198588 1591 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Cux1P53564 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Olfr874-201ENSMUST00000115004 933 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Cux1P53564 Gm15815-201ENSMUST00000120569 255 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Gm15015-201ENSMUST00000135491 636 ntTSL 3 BASIC17.01■□□□□ 0.31
Cux1P53564 St8sia3os-204ENSMUST00000140903 383 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Gm15020-201ENSMUST00000147142 636 ntTSL 3 BASIC17.01■□□□□ 0.31
Cux1P53564 Mir6973a-201ENSMUST00000183646 78 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Gm7904-201ENSMUST00000217049 465 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Gm3791-201ENSMUST00000220790 768 ntBASIC17.01■□□□□ 0.31
Cux1P53564 AC125409.3-201ENSMUST00000223488 653 ntBASIC17.01■□□□□ 0.31
Cux1P53564 AC116797.2-202ENSMUST00000223587 1017 ntBASIC17.01■□□□□ 0.31
Cux1P53564 Stpg4-201ENSMUST00000040609 847 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cux1P53564 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Cux1P53564 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Cux1P53564 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Gm38312-201ENSMUST00000195426 1746 ntBASIC17■□□□□ 0.31
Cux1P53564 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Cux1P53564 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC17■□□□□ 0.31
Cux1P53564 Il15ra-203ENSMUST00000114831 882 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Rpl17-ps1-201ENSMUST00000119156 552 ntBASIC17■□□□□ 0.31
Cux1P53564 6430531B16Rik-202ENSMUST00000121412 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Gm6686-201ENSMUST00000178455 258 ntBASIC17■□□□□ 0.31
Cux1P53564 Gm29595-202ENSMUST00000187954 466 ntTSL 3 BASIC17■□□□□ 0.31
Cux1P53564 Gm43811-201ENSMUST00000202862 695 ntBASIC17■□□□□ 0.31
Cux1P53564 Gm30055-201ENSMUST00000203175 803 ntBASIC17■□□□□ 0.31
Cux1P53564 Cd300c2-201ENSMUST00000092464 1187 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cux1P53564 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Cux1P53564 Arhgef3-204ENSMUST00000225949 3198 ntBASIC17■□□□□ 0.31
Cux1P53564 Gab3-202ENSMUST00000114104 1705 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms