Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Lima1Q9ERG0 Zfp280d-211ENSMUST00000184036 3459 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Lima1Q9ERG0 Dip2a-205ENSMUST00000160048 6551 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Lima1Q9ERG0 Pck2-201ENSMUST00000048781 3400 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lima1Q9ERG0 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lima1Q9ERG0 Syn2-203ENSMUST00000203450 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lima1Q9ERG0 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lima1Q9ERG0 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Lima1Q9ERG0 Frmd4b-201ENSMUST00000032146 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lima1Q9ERG0 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Lima1Q9ERG0 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 1700017B05Rik-201ENSMUST00000034846 4152 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Tyro3-202ENSMUST00000110783 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 CT868720.1-201ENSMUST00000223069 2544 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Ralgps1-202ENSMUST00000091039 2738 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Mlc1-202ENSMUST00000109368 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Grik1-201ENSMUST00000023652 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm6124-201ENSMUST00000188240 2580 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 G630064G18Rik-201ENSMUST00000209814 1795 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm15711-201ENSMUST00000118889 535 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm4310-201ENSMUST00000177847 889 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm28937-201ENSMUST00000185413 695 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm29400-201ENSMUST00000187208 695 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm28662-201ENSMUST00000188446 695 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm28251-201ENSMUST00000188835 695 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm4857-201ENSMUST00000192718 785 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm37318-201ENSMUST00000194325 695 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm38017-201ENSMUST00000194768 695 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm37287-201ENSMUST00000195449 695 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm37793-201ENSMUST00000195548 695 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gm18539-201ENSMUST00000204745 1090 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 AC134869.4-202ENSMUST00000224350 837 ntBASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Slc18a1-201ENSMUST00000037478 3115 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Unkl-202ENSMUST00000039734 4779 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Trmt12-201ENSMUST00000036937 4454 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Gtf2ird1-204ENSMUST00000100652 3693 ntAPPRIS P4 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Vwa5b2-202ENSMUST00000096197 4527 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Zfp964-203ENSMUST00000204285 4333 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Serac1-202ENSMUST00000097432 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Mtmr7-205ENSMUST00000174205 2679 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Tubb2b-201ENSMUST00000075774 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Lima1Q9ERG0 Fan1-201ENSMUST00000163289 3460 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Pik3cb-201ENSMUST00000035037 6478 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Zer1-201ENSMUST00000044751 4100 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Cryz-201ENSMUST00000029850 2507 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Gm19040-201ENSMUST00000203280 4726 ntBASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Il10ra-202ENSMUST00000176222 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Imp4-201ENSMUST00000027303 5836 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Gm5441-201ENSMUST00000186454 5181 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Mthfd1l-203ENSMUST00000120585 3687 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Immt-206ENSMUST00000166975 2469 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Gm3332-201ENSMUST00000189337 928 ntBASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Gm38117-201ENSMUST00000194653 939 ntBASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Gm5982-201ENSMUST00000196234 512 ntBASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 AC107638.1-201ENSMUST00000213690 1061 ntBASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Stx1b-201ENSMUST00000106267 4536 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Gfm2-201ENSMUST00000022170 3089 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Lima1Q9ERG0 CT010447.1-201ENSMUST00000225657 1608 ntBASIC11.08□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms