Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Snx31-203ENSMUST00000161202 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Gm44826-201ENSMUST00000207648 2332 ntBASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Selenot-ps-201ENSMUST00000119098 593 ntBASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Gm12516-201ENSMUST00000120819 385 ntBASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Gm8737-201ENSMUST00000122208 642 ntBASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Gm27910-201ENSMUST00000185004 107 ntBASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Gm34023-201ENSMUST00000195539 217 ntBASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Pnkd-202ENSMUST00000087225 2859 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Tacc2-217ENSMUST00000209108 3310 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Anxa6-201ENSMUST00000102727 2471 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Kpna7-202ENSMUST00000110673 2453 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Smc1aQ9CU62 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Kcnn3-201ENSMUST00000000811 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Ank1-204ENSMUST00000117270 5652 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 AC158355.1-201ENSMUST00000215895 1705 ntBASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Ift88os-201ENSMUST00000149702 2016 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm15352-201ENSMUST00000118696 270 ntBASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm11451-201ENSMUST00000118946 630 ntBASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm23045-201ENSMUST00000175041 96 ntBASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm25072-201ENSMUST00000175233 235 ntBASIC12.63□□□□□ -0.39
Smc1aQ9CU62 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm5852-201ENSMUST00000194119 1021 ntBASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm5542-201ENSMUST00000195485 1089 ntBASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 AC129219.2-201ENSMUST00000224324 701 ntBASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Flad1-202ENSMUST00000107426 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Arhgap11a-202ENSMUST00000110947 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Dld-201ENSMUST00000110857 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 3425401B19Rik-201ENSMUST00000096038 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Adamts9-201ENSMUST00000113438 8016 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Rbbp5-202ENSMUST00000187505 1977 ntTSL 5 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 AC169511.2-201ENSMUST00000226674 2063 ntBASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Dok4-204ENSMUST00000212810 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC12.63□□□□□ -0.39
Smc1aQ9CU62 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Gm10152-201ENSMUST00000193475 1344 ntBASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Synpr-201ENSMUST00000070323 2541 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 L3mbtl1-201ENSMUST00000035751 2724 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Nfx1-201ENSMUST00000030133 4349 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Gm12036-201ENSMUST00000120008 530 ntBASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Gm14247-201ENSMUST00000120950 237 ntBASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Gm6485-201ENSMUST00000160676 439 ntBASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Gm29499-201ENSMUST00000189151 486 ntBASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Gm28329-201ENSMUST00000191208 689 ntBASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Gm29171-201ENSMUST00000191397 486 ntBASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 AC153929.1-201ENSMUST00000219009 303 ntBASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Smc1aQ9CU62 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms