Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Gm7964-201ENSMUST00000051522 1378 ntBASIC11.97□□□□□ -0.49
Sf3b1Q99NB9 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 AC154537.1-201ENSMUST00000226101 1304 ntBASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Mir453-201ENSMUST00000104732 82 ntBASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Gm11560-201ENSMUST00000117567 948 ntBASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Gm11801-201ENSMUST00000117807 746 ntBASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Gm6322-201ENSMUST00000118789 1004 ntBASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Gm15617-201ENSMUST00000118973 771 ntBASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Gm24248-201ENSMUST00000157321 322 ntBASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Gm43692-201ENSMUST00000198236 1062 ntBASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Mir483-201ENSMUST00000093631 73 ntBASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sf3b1Q99NB9 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC11.96□□□□□ -0.5
Sf3b1Q99NB9 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sf3b1Q99NB9 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Sf3b1Q99NB9 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sf3b1Q99NB9 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Sf3b1Q99NB9 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sf3b1Q99NB9 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sf3b1Q99NB9 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sf3b1Q99NB9 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.5
Sf3b1Q99NB9 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Sf3b1Q99NB9 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm15784-201ENSMUST00000120260 1462 ntBASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm17192-201ENSMUST00000169031 511 ntBASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm26982-201ENSMUST00000182250 1151 ntBASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm29164-201ENSMUST00000185454 1024 ntBASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm36987-201ENSMUST00000194704 2979 ntBASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm6423-201ENSMUST00000204315 934 ntBASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm35713-201ENSMUST00000210516 199 ntBASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm9111-201ENSMUST00000219394 709 ntBASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC11.95□□□□□ -0.5
Sf3b1Q99NB9 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Gm13284-201ENSMUST00000121020 547 ntBASIC11.94□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms